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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCTGGCAAATCCGGTGGTCCAGCAGAGAGAAAAGAGGTTCTTTTGGAGGATCATGATCCTATATGGCTCGAACTTCGCCATGCTCATATTGCATATgtacatcctgcttttatgcctttactataataggtctaagcaacatgaataccttttgatattgatgaccattccag

Basic information

species Glycine max
transcript GLYMA11G03230.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G03230.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os04g18030.3 (Oryza sativa), 5'ss of exon 12
GTTCCTGGCAAATCCGGTGGTCCAGCAGAGAGAAAAGAGGTTCTTTTGGAGGATCATGATCCTATATGGCTCGAACTTCGCCATGCTCATATTGCATATgtacatcctgcttttatgcctttactataataggtctaagcaacatgaataccttttgatattgatgaccattccag
|| ||  |||| || |||       | ||||  || |||||| | ||||||||||||||||| |||||||| || ||||| ||||  ||||| ||  ||||    |   |     || ||  |  | | ||  | || ||  ||| ||| | |  ||   |  ||    ||| |||
GTCCCAAGCAAGTCTGGTTCAGGCACTGAGAACAAGGAGGTTTTGTTGGAGGATCATGATCCAATATGGCTTGAGCTTCGGCATgtacatatagccaatgtgagactgtcaccattgtctccaa-acattatctatatgcttcattaatgcatcatggagtcaat----attgcag

upper sequence: GLYMA11G03230.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv13s0019g05000.t01 (Vitis vinifera), 5'ss of exon 11
GTTCCTGGCAAATCCGGTGGTCCAGCAGAGAGAAAAGAGGTTCTTTTGGAGGATCATGATCCTATATGGCTCGAACTTCGCCATGCTCATATTGCATATgtacatcct--gcttttatgcctttac---tataa--------------------taggtctaagcaacatgaataccttttgat-attgatgaccattccag
|||||  | ||| | ||||||||| |||||| |||||| || ||||||||||||||||||||| | ||||| || || |||||||| ||||| ||| |||||   | |  | |||||  | |  |    | |||                    |     |||   |  | |||    ||||   |||||  ||| |  |||
GTTCCAAGTAAAACAGGTGGTCCACCAGAGAAAAAAGAAGTCCTTTTGGAGGATCATGATCCTGTCTGGCTTGAGCTCCGCCATGCACATATAGCAGATgtatgccttatgtttttagacatccatacatgtaaatgcacatgcatgttcaatttgtacataaatcatgtaaattttctttggccattgaccaccttgtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21602829|gb|BQ613160.1|BQ613160
EST:     AGGATCATGATCCTATATGGCTCGAACTTCGCCATGCTCATATTGCATAT                         GCTAGTGAACAGCTGCATGAGAAGATGACCAACTTCATTTCGAAGAACAAA
genomic: AGGATCATGATCCTATATGGCTCGAACTTCGCCATGCTCATATTGCATATgtacatcctg ... accattccagGCTAGTGAACAGCTGCATGAGAAGATGACCAACTTCATTTCGAAGAACAAA
EST: gi|254335298|gb|GR846795.1|GR846795
EST:     GATCAATGATCCCTATATGGCTCGAACTTCGCCATGCTCATATTGCATAT                         GCTAGTGAACAGCTGCATGAGAAGATGACCAACTTCATTTCGAAGAACAAA
genomic: GATC-ATGAT-CCTATATGGCTCGAACTTCGCCATGCTCATATTGCATATgtacatcctg ... accattccagGCTAGTGAACAGCTGCATGAGAAGATGACCAACTTCATTTCGAAGAACAAA
EST: gi|20497874|gb|BQ272804.1|BQ272804
EST:     AGGATCATGATCCTATATGGCTCGAACTTCGCCATGCTCATATTGCATAT                         GCTAGTGAACAGCTGCATGAGAAGATGACCAACTTCATTTCGAAAAACAAA
genomic: AGGATCATGATCCTATATGGCTCGAACTTCGCCATGCTCATATTGCATATgtacatcctg ... accattccagGCTAGTGAACAGCTGCATGAGAAGATGACCAACTTCATTTCGAAGAACAAA