Sequence
atgc intronic sequence ATGC exonic sequenceCTTCCAGCTCTCCTGGTTCACAATCATCAAGCTTCTCATGGGTGTTTGACCTAAGGGGGATTGCAGAAATGTATCAATCCTATGAAGAAACAAATTTGTGgtacttactgtgatatctatgataacaaagctagctgtaatatattgattattattggccttaattctttggttgagatgggttccttcctgcatgattg...
Basic information
species | Glycine max |
transcript | GLYMA11G01670.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G01670.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv18s0001g06010.t01 (Vitis vinifera), 5'ss of exon 11
CTTCCAGCTCTCCTGGTTCACAATCATCAAGCTTCTCATGGGTGTTTGACCTAAGGGGGATTGCAGAAATGTATCAATCCTATGAAGAAACAAATTTGTGgtacttactgtgatatctatgataacaaagctagctg-taatatattgattattattggccttaattc--tttggttgagatgggttccttcctgcatgattg
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AGACCAGTTCCCCTGGTTCATCATCGCCAAGCTTCTCATGGGTGTTTGACCTCAAGGGAATTGCTGAGATGTATCAATCCTATGAAGAAACAAATTTATGgtattcatgttcagaacttgtttttcatcttgaattgatgtcaaatctcatattattcttctaaatacggcttatttctgaagatcttctaatttgataa---
upper sequence: GLYMA11G01670.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S90_13V6.1 (Physcomitrella patens), 5'ss of exon 11
CTTCCAGCTCTCCTGGTTCACAATCATCAAGCTTCTCA-TGGGTGTTTGACCTAAGGGGGATTGCAGAAATGTATCAATCCTATGAAGAAACAAATTTGTGgta--cttactgtgatatctatgataacaaagctagctgtaatatattgattattattggccttaattctttggttgagatgggttccttcctgcatgattg--------------------------------------------------------
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-TGAAAGCTGCCAAAGCAGAAGGTCGTTCAGGATATGAGTGGGTGTTTGATCTGGAAGGCATCGCTGACATGTATAAATCCTATGAAGATACAAATTTGTGgtagattatccttcaccttcattatgctaaacc---ctgtattatcgttac-accacacattttagcattttgataggcgtctctaattttcgccagcgtccgctctcaactttatggtgcatatctctctgactatgcatggtttggcatttgacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16346287|gb|BI971882.1|BI971882EST: CTAAGGGGGATTGCAGAAATGTATCAATCCTATGAAGAAACAA-TTTGTG GAAAATTGTTGAAGATGTACCTCGTGGGGTGCATGTGAACTTTTTGAAAGC
genomic: CTAAGGGGGATTGCAGAAATGTATCAATCCTATGAAGAAACAAATTTGTGgtacttactg ... ctgttcatagGAAAATTGTTGAAGATGTACCTCGTGGGGTGCATGTGAACTTTTTGAAAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTCCAGCTCTCCTGGTTCACAATCATCAAGCTTCTCATGGGTGTTTGACCTAAGGGGGATTGCAGAAATGTATCAATCCTATGAAGAAACAAATTTGTGgtacttactgtgatatctatgataacaaagctagctgtaatatattgattattattggccttaattctttggttgagatgggttccttcctgcatgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttcct