Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCATCTCCATATATAAAGTGGTATTATCAGAAAAGATAAAGAAAAACCTACTTGATACTCTCAATGAGAATTTGAGGCATCCTAATTCTCAGATACAGgttctattcctctgatacaggcaatttctgttgccattttaacttttgtttaatatcgtcagcttatgccagttgggcactatatatctgaaaatcaatatcttcatttgatgttcag

Basic information

species Glycine max
transcript GLYMA10G42560.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42560.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os10g36490.1 (Oryza sativa), 5'ss of exon 10
ATGCATCTCCATATATAAAGTGGTATTATCAGAAAAGATAAAGAAAAACCTACTTGATACTCTCAATGAGAATTTGAGGCATCCTAATTCTCAGATACAGgttctattcctctgatacaggcaatttctgttgccattttaacttttgtttaatatcgtcagcttatgccagttgggcactatatatctgaaaatcaatatcttcatttgatgttcag
|||||| || || | |    |    ||    || |||| ||||| ||   |  | || || || |||||||||||||||||||| ||| |||| ||||||||   |    |||      ||    ||   |   ||  | |||   | |   || |  | |   |  |  ||   |  ||  | ||    ||  |     |  |||  |         
ATGCATTTCTATGTCTGGGATATCCTTGAATGAGAAGACAAAGAGAAGTTTGTTAGAAACCCTTAATGAGAATTTGAGGCATCCCAATGCTCAAATACAGgtgagagctttct----ttggt--cttgaatcagcaactgaacaaatttcccatgtaattatgcttggttag---gctacagtctactataactttccagttctcaggt---------

upper sequence: GLYMA10G42560.1 (Glycine max), 5'ss of exon 11
lower sequence: AT3G60740.1 (Arabidopsis thaliana), 5'ss of exon 11
ATGCATCTCCATATATAAAGTGGTATTATCAGAAAAGATAAAGAAAAACCTACTTGATACTCTCAATGAGAATTTGAGGCATCCTAATTCTCAGATACAGgt-tctattcctctgata--caggcaatttctgttgccattttaacttttgtttaata-tcgtcagcttatgccagttgggcactatatatctgaaaatcaatatcttcatttgatgttcag
 || || ||  |||   | |||   ||| | ||||  | | |    | | | ||||||||||||| ||||||||| || ||||| |||||||| ||||||||  ||||   ||| | |  || | | ||  | |   | | ||| |     || |||| | | ||  ||   |   ||   ||                                       
GTGTATTTCGTTATCGCATGTGACTTTAGCTGAAAGAACAGAACGGATCTTGCTTGATACTCTCACTGAGAATTTAAGACATCCCAATTCTCAAATACAGgtacctatctttctaaaagtcatgaagttattctcatcctattagcaga-attcaatagttgacaagtttcacttattatacag--------------------------------------

upper sequence: GLYMA10G42560.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv15s0048g00470.t01 (Vitis vinifera), 5'ss of exon 11
ATGCATCTCCATATATAAAGTGGTATTATCAGAAAAGATAAAGAAAAACCTACTTGATACTCTCAATGAGAATTTGAGGCATCCTAATTCTCAGATACAGgttctattcctctgatacaggcaatttctgttgccattttaacttttgtttaatatcgtcagcttatgccagttgggcactatatatctgaaaatcaatatcttcatttgatgttcag
||| || ||  ||  |    |  |  || |||| |||| |||   ||  || |||||||||||||| ||||||||||||||||||||||| |||||||||||     |  | |    |    |||  |||||  |   |||  |||| |||    || | |   |||      |    | || | || |         | | | |||    ||| |||
ATGTATATCTTTAGCTTGTTTATTTGTACCAGAGAAGACAAAACGAACTCTGCTTGATACTCTCAACGAGAATTTGAGGCATCCTAATTCCCAGATACAGgtgtctcttttttagctc----aatgactgtttgctcattaggttttatttc---tctttataatatattgaatttctaatagacatat---------tttttccatgaactgtacag