Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCACTCCTGAGGAGCGGCAGGCAATTGAACGTgtaagtttgacttggctatataaagacttaaatgatagatgttttcttgctcaagtattttaggactatgaaaacaccagtttaattattaagttaaaac...

Basic information

species Glycine max
transcript GLYMA10G42180.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213597054|gb|DB977590.1|DB977590
EST:     TGCCACAAGCAGTAACCGTCACTCCTGAGGAGCGGCAGGCAATTGAACGT                         CTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTGTACTTCGCT
genomic: TGCCACAAGCAGTAACCGTCACTCCTGAGGAGCGGCAGGCAATTGAACGTgtaagtttga ... ttaaccccagCTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTGTACTTCGCT
EST: gi|15285661|gb|BI469552.1|BI469552
EST:     TGCCACAAGCAGTAACCGTCACTCCTGAGGAGCGGCAGGCAATTGAACGT                         CTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTGTACTTCGCT
genomic: TGCCACAAGCAGTAACCGTCACTCCTGAGGAGCGGCAGGCAATTGAACGTgtaagtttga ... ttaaccccagCTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTGTACTTCGCT
EST: gi|10709284|gb|BF009008.1|BF009008
EST:     TGCCACAAGCAGTAACCGTCACTCCTGATGAGCGGCAGGCAATTGAACGT                         CTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAAGTGTACTTCGCT
genomic: TGCCACAAGCAGTAACCGTCACTCCTGAGGAGCGGCAGGCAATTGAACGTgtaagtttga ... ttaaccccagCTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTGTACTTCGCT
EST: gi|12690109|gb|BG156445.1|BG156445
EST:     TGCCACAAGCAGTAACCGTCACTCCTGAGGAGCGGCAGGCAATTGAACGT                         CTTGAAGCAATGGGTTTTGATCGTGCAATCGTTATTGGAG-TGTACTTCGC
genomic: TGCCACAAGCAGTAACCGTCACTCCTGAGGAGCGGCAGGCAATTGAACGTgtaagtttga ... ttaaccccagCTTGAAGCAATGGGTTTTGATCGTGCAATCGT-ATTGGAGGTGTACTTCGC
EST: gi|213596136|gb|DB977498.1|DB977498
EST:     G-CACGAAGCAGTAACCGTCACTCCTGAGGAGCGGCAGGCAATTGAACGT                         CTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTGTACTTCGCT
genomic: GCCAC-AAGCAGTAACCGTCACTCCTGAGGAGCGGCAGGCAATTGAACGTgtaagtttga ... ttaaccccagCTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTGTACTTCGCT
EST: gi|151401292|gb|EV271106.1|EV271106
EST:     TGCCACAAGCAGTAACCGTCACTCCTGAGGAGCGGCAGGCAATTGAACGT                         CTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTGTACTTCGCT
genomic: TGCCACAAGCAGTAACCGTCACTCCTGAGGAGCGGCAGGCAATTGAACGTgtaagtttga ... ttaaccccagCTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTGTACTTCGCT
EST: gi|24205755|gb|BU965008.1|BU965008
EST:     TGCCACAAGCAGTAACCGTCACTCCTGAGGAGCGGCAGGCAATTGAACGT                         CTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTGTACTTCGCT
genomic: TGCCACAAGCAGTAACCGTCACTCCTGAGGAGCGGCAGGCAATTGAACGTgtaagtttga ... ttaaccccagCTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTGTACTTCGCT
EST: gi|15663984|gb|BI701355.1|BI701355
EST:     TGCCACAAGCAGTAACCGTCACTCCTGAGGAGCGGCAGGCAATTGAACGT                         CTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTGTACTTCGCT
genomic: TGCCACAAGCAGTAACCGTCACTCCTGAGGAGCGGCAGGCAATTGAACGTgtaagtttga ... ttaaccccagCTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTGTACTTCGCT
EST: gi|10709685|gb|BF009409.1|BF009409
EST:     TGCCACAAGCAGTAACCGTCACTCCTGAGGAGCGGCAGGCAATTGAACGT                         CTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTGTACTT
genomic: TGCCACAAGCAGTAACCGTCACTCCTGAGGAGCGGCAGGCAATTGAACGTgtaagtttga ... ttaaccccagCTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTGTACTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCACTCCTGAGGAGCGGCAGGCAATTGAACGTgtaagtttgacttggctatataaagacttaaatgatagatgttttcttgctcaagtattttaggactatgaaaacaccagtttaattattaagttaaaac

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG