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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATACCTCCTCGAAATTCAGTTGTTATATATAGGTTGATTTTGTGGTGGCTACTTGCGATTCCAACAATTCGCGAGTACAACTCATACCTTCAAGACAGgtacatttttctgcatctctctcgtttccctcccacccctacccaaaagaagtcacattggagatatcctaccaaaattttgacattttttcctcatatattccttgtgattttttcag

Basic information

species Glycine max
transcript GLYMA10G41430.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os01g02890.1 (Oryza sativa), 5'ss of exon 10
GGATACCTCCTCGAAATTCAGTTGTTATATATAGGTTGATTTTGTGGTGGCTACTTGCGATTCCAACAATTCGCGAGTACAACTCATACCTTCAAGACAGgtacatttttctgcatctctctcgtttccctcccacccctacccaaaagaagtcacattggagatatcctaccaaaattttgacattttttcctcatatattccttgtgattttttcag
|||| ||||| |||||  |  |  || | ||  |  |  |  | |||||| || ||||||| ||||| ||||||||||||||  ||||| | ||||||||||  || ||     | ||| ||    | | |        |     ||   | | |  ||  |  | |   |  ||||  |  |     | ||    ||| ||  |  ||| ||      
GGATTCCTCCCCGAAACCCCTTGATTGTTTACCGACTTGTCCTTTGGTGGTTAATTGCGATACCAACCATTCGCGAGTACAATACATACTTACAAGACAGgtgaatattg----aactccctaagcttctttttttgaatgtatgaacttaattagcttcaaactgt---aaaaaaaaataaa-----tctctaagtatgttt-tgatgagtt------

upper sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G15110.2 (Arabidopsis thaliana), 5'ss of exon 11
GGATACCTCCTCGAAATTCAGTTGTTATATATAGGTTGATTTTGTGGTGGCTACTTGCGATTCCAACAATTCGCGAGTACAACTCATACCTTCAAGACAGgtacatttttctgcatctctctcgtttccctcccacccctacccaaaagaagtcacattggagatatcctaccaaaattttgacattttttcctcatatattccttgtgattttttcag
|||| || ||||||||  ||||  || | |||||| |||| |||||||||||  | ||||| |||||||  || |||||||| ||||| |||||||||||||| |     ||  | |     || |                    ||  |||    ||| | ||| | |    |  ||| |   ||                                
GGATCCCCCCTCGAAACCCAGTGATTCTCTATAGGCTGATCTTGTGGTGGCTCATAGCGATACCAACAACACGGGAGTACAATTCATATCTTCAAGACAGgtaaa----gctatagccactgcgatattggttggagttagtttggaaagagtt---ttgtatataacttgtgtagttttggttgttcacag---------------------------

upper sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 11
GGATACCTCCTCGAAATTCAGTTGTTATATATAGGTTGATTTTGTGGTGGCTACTTGCGATTCCAACAATTCGCGAGTACAACTCATACCTTCAAGACAGgtacatttttctgcatctctctcgtttccctcccacccctacccaaaagaagtcacattggagatatcctaccaaaattttgacattttttcctcat----atattccttgtgat-tttttcag
|||| |||||||||||  | ||  || | ||| ||||||| |||||||||||| |||| || ||||||||||| |||||||| |||||| | || |||||||||  | |       ||   | |      |   ||    |  | ||  | | || |   |   ||   | |  | | ||  | ||||||    |||     ||    |||||   || |||||
GGATTCCTCCTCGAAACCCTGTGATTGTGTATCGGTTGATCTTGTGGTGGCTAATTGCAATACCAACAATTCGTGAGTACAATTCATACTTACAGGACAGgtactatctctccttgcttatttgcaaatattatacttg-atactaagaatgcca-accagcattagtgtgcatatagttcaa-atttttcttacattttggtaaatgttgtgtcgttcttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10237104|gb|BE805992.1|BE805992
EST:     CTCATACCTTCAAGACAG                         AAAGCCAGTGAAAAAGGTTGGGGCATATTGTTGGCTCTCTCTTGCCATTTG
genomic: CTCATACCTTCAAGACAGgtacattttt ... attttttcagAAAGCCAGTGAAAAAGGTTGGGGCATATTGTTGGCTCTCTCTTGCCATTTG
EST: gi|208103894|gb|GD906839.1|GD906839
EST:     CTACTTGCGATCCCAACAATTCGCGAGTACAACTAATACCTTCAAGACAG                         AAAGCCAGTGAAAAAG
genomic: CTACTTGCGATTCCAACAATTCGCGAGTACAACTCATACCTTCAAGACAGgtacattttt ... attttttcagAAAGCCAGTGAAAAAG