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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGCCTGGCAACCTTGGCAAACGTGGCACCTCATGTTCATCGTTTGAGTGCATATGCATCTCAGAGATTAGTCAGCCTTTTTGATATGCTTTCACGCAAgtatgtcactcttttgtttgtcttcataatgttctattccatttctttatgtcttagaacattgtaatcaccggttaaaaatctggccaccatatatttgcttcttattag

Basic information

species Glycine max
transcript GLYMA10G38920.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38920.2 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os01g56630.2 (Oryza sativa), 5'ss of exon 11
CATGCCTGGCAACCTTGGCAAACGTGGCACCTCATGTTCATCGTTTGAGTGCATATGCATCTCAGAGATTAGTCAGCCTTTTTGATATGCTTTCACGCAAgtatgtcactcttttgtttgtcttcataatgt-tctattccatttctttatgtcttagaacattgtaatcaccggttaaaaatctggccaccatatatttgcttcttattag
  ||||| ||||   | |||||  |||| |||||||| ||| |  ||||||||||||||||||| ||  | || ||||| ||||| ||||| || ||||||||||   |||  |   |  |  ||  | | | | ||       |||||   | ||| |  | ||  | |    ||||         |  |  | |||       |  | ||
ACTGCCTTGCAATTCTAGCAAATATGGCCCCTCATGTGCATAGGCTGAGTGCATATGCATCTCAAAGGCTGGTTAGCCTCTTTGACATGCTCTCTCGCAAgtatg---ctcgctcaatctttctcccagtttatttaccttgaatcttt---tgttacataagtgacacctaaagttaccttatcttctgcttt-tatgcaacattcttcag

upper sequence: GLYMA10G38920.2 (Glycine max), 5'ss of exon 11
lower sequence: AT1G04200.1 (Arabidopsis thaliana), 5'ss of exon 11
CATGCCTGGCAACCTTGGCAAACGTGGCACCTCATGTTCATCGTTTGAGTGCATATGCATCTCAGAGATTAGTCAGCCTTTTTGATATGCTTTCACGCAAgtatgtcactcttttgtttgtcttcataatgttctattccatttctttatgtcttagaacattgtaatcaccggttaaaaatctggccaccatatatttgcttcttattag
| ||||| || || ||||| ||| ||||||||||||  |||| ||| ||||||||||| || |||||  | |||||||||||  | |||||||| || ||||||| || |   ||  | |||||  || ||   |  |  || | ||| |||   | |    |||| | || | | |  ||| ||   | || |                 
CTTGCCTTGCTACGTTGGCTAACATGGCACCTCATGCCCATCATTTAAGTGCATATGCCTCACAGAGGCTTGTCAGCCTTTTCTACATGCTTTCTCGAAAgtatg-caattagttcctcgtcttttta-tgacttcataaatctgtttttgtac-atattcctgta-taacggatcatgaat-tgtttaacacag----------------

upper sequence: GLYMA10G38920.2 (Glycine max), 5'ss of exon 11
lower sequence: Vv05s0020g04100.t01 (Vitis vinifera), 5'ss of exon 11
CATGCCTGGCAACCTTGGCAAACGTGGCACCTCATGTTCATCGTTTGAGTGCATATGCATCTCAGAGATTAGTCAGCCTTTTTGATATGCTTTCACGCAAgtatgtcactcttttgt-ttgtcttcataatgttctattccatttctttatgtcttagaacattgtaatcaccggttaaaaatctggccaccatatatttgcttcttattag
  || || ||||| ||||| ||| |||| |||||||  || ||||| ||||| |||||||| |||||  | || ||||||||||||||||| ||||||||||||||   | || | | |||      |  |  | |     | | ||||   | | ||  | || | |||     | |    ||     |   ||   |||  ||       
ACTGTCTCGCAACTTTGGCGAACATGGCTCCTCATGCCCACCGTTTAAGTGCCTATGCATCACAGAGGCTGGTTAGCCTTTTTGATATGCTCTCACGCAAgtatgtttatgttatatattgataatttggtaattttgataaatgctttcattttcagggc-ttatgatcttt--taatttttccttttattgtaatattggatccag----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393515|gb|EV263390.1|EV263390
EST:     GCATATGCATCTCAGAGATTAGTCAGCCTTTTTGATATGCTTTCACGCAA                         GTATATCAAATTAGCTGAACGCAGAGATAATAAGCTCCATACTGCAAAAGG
genomic: GCATATGCATCTCAGAGATTAGTCAGCCTTTTTGATATGCTTTCACGCAAgtatgtcact ... ttcttattagGTATATCAAATTAGCTGAACGCAGAGATAATAAGCTCCATACTGCAAAAGG
EST: gi|9898564|gb|BE607532.1|BE607532
EST:     GCATATGCATCTCAGAGATTAGTCAGCCTTTTTGATATGCTTTCACGCAA                         GTATATCAAATTAGCTGAACGCAGAGATAATAAGCTCCATACTGCAAAAGG
genomic: GCATATGCATCTCAGAGATTAGTCAGCCTTTTTGATATGCTTTCACGCAAgtatgtcact ... ttcttattagGTATATCAAATTAGCTGAACGCAGAGATAATAAGCTCCATACTGCAAAAGG