1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGTGGTTCCTGCATTCAAGTCTGCTGCTGAAGAGCTTTTGAACAGTTCTGGTTTACCAGTCATTGAATTACTGGCAAAGGCTCTTGCCAAGGCTGTTgtgagtcaatgttctcccacgttttctccatttattttttcttgcaaaatttcttttaaatatattaaaccctcatttgttatttttctaacctggaaaattgtcttatcatgtaatatgcag
species | Glycine max |
transcript | GLYMA10G38680.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTGGTTTACCAGTCATTGAATTACTGGCAAAGGCTCTTGCCAAGGCTGTT GGTTATACCGATGTAAAGEST: gi|7478693|gb|AW666367.1|AW666367
genomic: CTGGTTTACCAGTCATTGAATTACTGGCAAAGGCTCTTGCCAAGGCTGTTgtgagtcaat ... taatatgcagGGTTATACCGATGTAAAG
EST: CTGGTTTACCAGTCATTGAATTACTGGCAAAGGCTCTTGCCAAGGCTGTT GGTTATACCGATGTAAAGCAAAGATCACTTCTCACTTCCATGGAGAACTATEST: gi|151412885|gb|EV282697.1|EV282697
genomic: CTGGTTTACCAGTCATTGAATTACTGGCAAAGGCTCTTGCCAAGGCTGTTgtgagtcaat ... taatatgcagGGTTATACCGATGTAAAGCAAAGATCACTTCTCACTTCCATGGAGAACTAT
EST: CTGGTTTACCAGTCATTGAATTACTGGCAAAG-CTCTTGCCAAGGCTGTT GGTTATACCGATGTAA-GCAA-GATCACTTCTCACTTCCATGGAGA-CTAT
genomic: CTGGTTTACCAGTCATTGAATTACTGGCAAAGGCTCTTGCCAAGGCTGTTgtgagtcaat ... taatatgcagGGTTATACCGATGTAAAGCAAAGATCACTTCTCACTTCCATGGAGAACTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGGTTCCTGCATTCAAGTCTGCTGCTGAAGAGCTTTTGAACAGTTCTGGTTTACCAGTCATTGAATTACTGGCAAAGGCTCTTGCCAAGGCTGTTgtgagtcaatgttctcccacgttttctccatttattttttcttgcaaaatttcttttaaatatattaaaccctcatttgttatttttctaacctggaaaattgtcttatcatgtaatatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT