1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAAACAATTAGGACAGAGTTTGCAGATTGTACTGTAATCACGGTTGCCCACAGAATACCAACTGTGATGGATTGCACTAAGGTTCTTGCCATTCGTGAAGgtatgttgcatcttatctgcccgttatctaatattgcacatgacttttcatattaatccataggccttgctaatgccgcctcaaaagaattttgttctag...
species | Glycine max |
transcript | GLYMA10G37150.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CAGAATACCAACTGTGATGGATTGCACTAAGGTTCTTGCCATTCGTGAAG GAGAATTGGTGGAGTATGATGAGCCAATGAACTTGATGAAGAGAGAAGGATEST: gi|19935003|gb|BQ080033.1|BQ080033
genomic: CAGAATACCAACTGTGATGGATTGCACTAAGGTTCTTGCCATTCGTGAAGgtatgttgca ... ttgttttcagGAGAATTGGTGGAGTATGATGAGCCAATGAACTTGATGAAGAGAGAAGGAT
EST: CAGAATACCAACTGTGATGGATTGCACTAAGGTTCTTGCCATTCGTGAAG GAGAATTGGTGGAGTATGATGAGCCAATGAACTTGATGAAGAGAGAAGGATEST: gi|58025240|gb|CX711981.1|CX711981
genomic: CAGAATACCAACTGTGATGGATTGCACTAAGGTTCTTGCCATTCGTGAAGgtatgttgca ... ttgttttcagGAGAATTGGTGGAGTATGATGAGCCAATGAACTTGATGAAGAGAGAAGGAT
EST: CAGAATACCAACTGTGATGGATTGCACTAAGGTTCTTGCCATTCGTGAAG GAGAATTGGTGGAGTATGATGAGCCAATGAACTTGATGAAGAGAGAAGGAT
genomic: CAGAATACCAACTGTGATGGATTGCACTAAGGTTCTTGCCATTCGTGAAGgtatgttgca ... ttgttttcagGAGAATTGGTGGAGTATGATGAGCCAATGAACTTGATGAAGAGAGAAGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAACAATTAGGACAGAGTTTGCAGATTGTACTGTAATCACGGTTGCCCACAGAATACCAACTGTGATGGATTGCACTAAGGTTCTTGCCATTCGTGAAGgtatgttgcatcttatctgcccgttatctaatattgcacatgacttttcatattaatccataggccttgctaatgccgcctcaaaagaattttgttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaat