Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaatctcttctctttctgtcttcatcactatctcattcactcgtcacacagatactagccacccagatatgttcactgatatctttcactctg...

Basic information

species Glycine max
transcript GLYMA10G35560.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35560.2 (Glycine max), 5'ss of exon 11
lower sequence: AT1G48850.2 (Arabidopsis thaliana), 5'ss of exon 11
GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaatctcttctctttctg--tcttcatcactatctca----ttcactcgtca-cacagatactagccacccagatatgttcactgatatctttcactctg
|| || || || ||||| ||||| || || |||||| |||| |||||||||||||||||||||||||||||| |    |   ||| | | |  |||| || |  ||  ||    |   || |  | ||  |||  |  |   |||   |||  ||  |               
GGAGGGATCTCAAATGGTGAAATAATAAACATGAGAGTAGCCTTCAAGCCAACATCAACAATTGGAgtaagtttgtgataaactcatgcaggatctttataaacataacaaatgtcagcttgagatcattgatgttttctttcca---atgcgcagag---------------

upper sequence: GLYMA10G35560.2 (Glycine max), 5'ss of exon 11
lower sequence: AT1G48850.3 (Arabidopsis thaliana), 5'ss of exon 11
GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaatctcttctctttctg--tcttcatcactatctca----ttcactcgtca-cacagatactagccacccagatatgttcactgatatctttcactctg
|| || || || ||||| ||||| || || |||||| |||| |||||||||||||||||||||||||||||| |    |   ||| | | |  |||| || |  ||  ||    |   || |  | ||  |||  |  |   |||   |||  ||  |  |            
GGAGGGATCTCAAATGGTGAAATAATAAACATGAGAGTAGCCTTCAAGCCAACATCAACAATTGGAGTAAgtttgtgataaactcatgcaggatctttataaacataacaaatgtcagcttgagatcattgatgttttctttcca---atgcgcagaggaag-----------

upper sequence: GLYMA10G35560.2 (Glycine max), 5'ss of exon 11
lower sequence: AT1G48850.1 (Arabidopsis thaliana), 5'ss of exon 11
GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaatctcttctctttctg--tcttcatcactatctca----ttcactcgtca-cacagatactagccacccagatatgttcactgatatctttcactctg
|| || || || ||||| ||||| || || |||||| |||| |||||||||||||||||||||||||||||| |    |   ||| | | |  |||| || |  ||  ||    |   || |  | ||  |||  |  |   |||   |||  ||                  
GGAGGGATCTCAAATGGTGAAATAATAAACATGAGAGTAGCCTTCAAGCCAACATCAACAATTGGAgtaagtttgtgataaactcatgcaggatctttataaacataacaaatgtcagcttgagatcattgatgttttctttcca---atgcgcag-----------------

upper sequence: GLYMA10G35560.2 (Glycine max), 5'ss of exon 11
lower sequence: Vv13s0019g04190.t01 (Vitis vinifera), 5'ss of exon 11
GGTGGAATTTCCAATGGGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaatctct-tctctttctgtcttcatcactatctcattcactcgtcacacagatactagccacccagatatgttcactgatatctttcactctg
|| ||||| || || ||||||||||| || || ||||||| ||||||||||||||| ||||||||||||||     ||||| ||||| ||| || |   ||  |   ||  |||  |       || | ||  || |    | || |   | ||     |||  |  
GGCGGAATATCAAACGGGGAAATCATAAACATAAGAATAGGTTTCAAGCCAACATCTACAATTGGAgtaagcaagctctctctctctctctctcatgcacaagacaacaaacacatgcattcatgagaataatcagcatcctttggttg-taatggagctcagccaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16276418|gb|BI941848.1|BI941848
EST:     GGGAAATCATTAATATGAGAATAGCTNTCAAGCCAACATCAACAATTGGA                         AAGAAGCANAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|16276792|gb|BI942046.1|BI942046
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATTAGC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTAT-AGC
EST: gi|193486868|gb|FK450449.1|FK450449
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTT
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTT
EST: gi|120532705|gb|EH260838.1|EH260838
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|9565502|gb|BE475011.1|BE475011
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|10843361|gb|BF066663.1|BF066663
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAAGACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|254333630|gb|GR848548.1|GR848548
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAATACTGTGACTCGAGATNNNNNNNGAAACAGAGTTTATAGC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGAT-AAAAAAGAAACAGAGTTTATAGC
EST: gi|33387796|gb|CA851003.1|CA851003
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|208247306|gb|GE048950.1|GE048950
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|254335192|gb|GR846689.1|GR846689
EST:     CAACAATTGGA                         AAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: CAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|16277466|gb|BI942396.1|BI942396
EST:     GGGAAATCATTAATATGAGAATATCTTTCAAGCCAACATCAACAATCGGA                         AAGAAGCAATATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|254325998|gb|GR838879.1|GR838879
EST:     CAACAATTGGA                         AAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: CAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|19053065|gb|BM731732.1|BM731732
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAAGACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|19268860|gb|BM885116.1|BM885116
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAAGACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|16282970|gb|BI945300.1|BI945300
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCACAATACTGTGACTCGAGATACAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|193667765|gb|FK610185.1|FK610185
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGC-AAATACTGTGACTCGAGAT-AAAAAGAAACAGAG-TTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|207808737|gb|GD776748.1|GD776748
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
EST: gi|7691321|gb|AW759514.1|AW759514
EST:     GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGA                         AAGAAGCAAAAGACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC
genomic: GGGAAATCATTAATATGAGAATAGCTTTCAAGCCAACATCAACAATTGGAgtaagtctaa ... acttgtgcagAAGAAGCAAAATACTGTGACTCGAGATAAAAAAGAAACAGAGTTTATAGCC