Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTCCTGGTGGACTTCGTAGACTGCATGCTTTCTTGTCGTTTTGGAAACTTCTTATGTAACAGgtacttcctttgtttgcaacttgttttctccttggaatggatgtggtcattggcatcctttttcctgacacttctcactttgaatgttgtgaaagataag...

Basic information

species Glycine max
transcript GLYMA10G34510.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G34510.1 (Glycine max), 5'ss of exon 11
lower sequence: AT3G10550.1 (Arabidopsis thaliana), 5'ss of exon 17
GCTTTCCTGGTGGACTTCGTAGACTGCATGCTTTCTTGTCGTTTTGGAAACTTCTTATGTAACAGgtacttcctttgtttgcaacttgttttctccttggaatggatgtgg---tcattggcatcctttttcctgacacttctcactttgaatgttgtgaaagataag
 |||||||||| || ||  | || ||| ||||||| ||||||||||| ||||||||||| ||||||||   | ||  |||| | ||      |    || | ||  | ||    | ||||| ||  |  ||  | | |  ||| |  | |  |    |  |       
ACTTTCCTGGTAGATTTTATGGATTGCTTGCTTTCATGTCGTTTTGGGAACTTCTTATGCAACAGgtaaaactttcttttgaagctc-----caaactgaagtgattctgaaaataattggtattatgatttatca-atatctgagctggtgtaaatttcag------