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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactgctgctttttttttgtgtgtgtgtgtgtgtgctatgtgctctaatgtgacaccaccatcagcattgtttgcgtaattaatagccaaaagaa...

Basic information

species Glycine max
transcript GLYMA10G32850.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32850.2 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os12g40550.1 (Oryza sativa), 5'ss of exon 11
GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactgctgctttttttttgtgtgtgtgtgtgtgtgctatgtgctcta-atgtgacaccaccatcag-cattgtttgcgtaattaatagccaaaagaa
  | || |||||||| ||||| ||||||||||||||||||||| | |||  |  | |  |   |   |||     |       |  | ||  | |||  | |        ||  ||| |       |  |  |    ||| | 
AATATCACCAATGGGTATGATCTTCATTCCATGTTACAAAGgtctgtac-accacgtcatcacttcttgtcctactaaagatcaattacttgagatgctagaatgtttcaagatattctaatttccaccaccaattgaaaaa-

upper sequence: GLYMA10G32850.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv05s0020g04900.t01 (Vitis vinifera), 5'ss of exon 11
GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactgctgctttttttttgtgtgtgtgtgtgtgtgctatgtgctctaatgtgacaccaccatcagcattgtttgcgtaattaatagccaaaagaa
  | ||||||||||| ||||| |||||||||||||||||||||||   ||      | | |||  |     ||    | |   ||   || | ||   |       || |         || | |||  |  |  |  | |
AATATCTCCAATGGGTATGATATTCATTCCATGTTACAAAGgtatgagctatcatctctctttgctacaactgaaattctttcataaccttttataccatgtttaaattatggaatgaagcatgattggtttctgattgca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7590824|gb|AW706568.1|AW706568
EST:     GGCCAGGTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
genomic: GGCCAGGTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
EST: gi|193398343|gb|FK363481.1|FK363481
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAAAT
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAA-T
EST: gi|13790927|gb|BG653518.1|BG653518
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
EST: gi|213591946|gb|DB977346.1|DB977346
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
EST: gi|21675359|gb|BQ627710.1|BQ627710
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
EST: gi|193692910|gb|FK628491.1|FK628491
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAG
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAG
EST: gi|17963753|gb|BM270498.1|BM270498
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAAT
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCC-TGAAGAGTTTGCCACCATTGAAGATATGTCAAAT
EST: gi|6133980|gb|AW132430.1|AW132430
EST:     GTTGTCTCCAATGGGCATGATTNTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
EST: gi|22931346|gb|BU548485.1|BU548485
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
EST: gi|23729550|gb|BU762868.1|BU762868
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
EST: gi|209728924|gb|BW654991.1|BW654991
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
EST: gi|13252792|gb|BG363695.1|BG363695
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
EST: gi|10255068|gb|BE822834.1|BE822834
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
EST: gi|19345779|gb|BM890659.1|BM890659
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
EST: gi|298164165|gb|HO013810.1|HO013810
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
EST: gi|192306704|gb|FG998858.1|FG998858
EST:     GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAG                         GGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG
genomic: GTTGTCTCCAATGGGCATGATTTTCATTCCATGTTACAAAGgtatttactg ... gtttttgcagGGTACAGCCATAAGCCTGAAGAGTTTGCCACCATTGAAGATATGTCAAATG