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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTTATGGCCGTGTTTGCATACATATATCATCAGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAGgtaattatatttattttactatgtatattactttgtatatgtatttctaaattaacatttaagatgtttaatttatggaactgccgctgttcgcttcag

Basic information

species Glycine max
transcript GLYMA10G32660.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G32660.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os01g55360.1 (Oryza sativa), 5'ss of exon 11
ATGGTTATGGCCGTGTTTGCATACATATATCATCAGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAGgt---aattata-tttattttactatgtatattactttgtatatgtatttctaaattaacatttaagatgtttaatttatggaactgccgctgttcgcttcag
||||||||||| || ||||||||||||||||| || |||||  |   ||| ||||    ||| |||||  | || ||||| |||||    |  ||  || |||| |   ||| || || | | | | |||  |||| |     |||||  ||| |||  |  ||  |                    
ATGGTTATGGCAGTTTTTGCATACATATATCACCAATCATTCATATCGCCCCAAAACTACTCTGTTGAGCTAATCTTGGAACAGgtcaggaccatgcttcatttgagcctgtttactattgtct-tgtgtgattcttat---gcatttccgatcttttgtc-atccag-------------------

upper sequence: GLYMA10G32660.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM5G825110_T02 (Zea mays), 5'ss of exon 11
ATGGTTATGGCCGTGTTTGCATACATATATCATCAGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAGgtaattatatttattttactatgtatattactttgtatatgtatttctaaa----ttaacatttaagatgtttaatttatggaactgccgctgttcgcttcag
||||||||||| ||||||||||||||||| || ||||||||  |||  || || |   |||| ||||| || || ||||| ||||| |  ||  ||||     | | ||| ||   | ||       | | |||     ||| | |||   || | |||   |||   || ||  |  ||  |||||
ATGGTTATGGCAGTGTTTGCATACATATACCACCAGTCATTCATTGCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAGgtgaggatcgttatcactttttttatcttgagtggttcccccttctttaagcagtttatcttttgtcat-tgtaaccaatgt--ctaccttttctca-ttcag

upper sequence: GLYMA10G32660.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G452529_T03 (Zea mays), 5'ss of exon 3
ATGGTTATGGCCGTGTTTGCATACATATATCATCAGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAGgtaattatatttattttactatgtatattactttgtatatgtatttctaaattaacatttaagatgtttaatttatggaactgccgctgttcgcttcag
||||||||||| ||||||||||||||||| || || |||||  |||  || || |   |||| ||||| || || ||||| ||||| |  ||  |||||     || |   ||| ||  |     | ||| | |   ||  | |    |||     | |   |  ||   || ||   |||||
ATGGTTATGGCAGTGTTTGCATACATATACCACCAATCATTCATTGCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAGgtgaggatcattattacttaattttatttatttattgcggttcttttttatgcaatttatcttctgtcattctaacaaatgtgtacctttttcattcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26047133|gb|CA784017.1|CA784017
EST:     AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAG                         ATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
genomic: AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAGgtaattatat ... ttcgcttcagATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
EST: gi|10231720|gb|BE800608.1|BE800608
EST:     AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAG                         ATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
genomic: AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAGgtaattatat ... ttcgcttcagATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
EST: gi|58020396|gb|CX707138.1|CX707138
EST:     AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAG                         ATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
genomic: AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAGgtaattatat ... ttcgcttcagATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
EST: gi|58016663|gb|CX703405.1|CX703405
EST:     AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAG                         ATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
genomic: AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAGgtaattatat ... ttcgcttcagATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
EST: gi|22524723|gb|BU083534.1|BU083534
EST:     AGTCATTTGTTGTGCCGCACACTCTCTCGGATGACATGATTTTGGACCAG                         ATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
genomic: AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAGgtaattatat ... ttcgcttcagATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
EST: gi|209724721|gb|BW677776.1|BW677776
EST:     AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAG                         ATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
genomic: AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAGgtaattatat ... ttcgcttcagATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
EST: gi|10709049|gb|BF008710.1|BF008710
EST:     AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAG                         ATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
genomic: AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAGgtaattatat ... ttcgcttcagATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
EST: gi|15813749|gb|BI786024.1|BI786024
EST:     AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAG                         ATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
genomic: AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAGgtaattatat ... ttcgcttcagATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
EST: gi|13478930|gb|BG508273.1|BG508273
EST:     AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAG                         ATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
genomic: AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAGgtaattatat ... ttcgcttcagATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
EST: gi|58014553|gb|CX701295.1|CX701295
EST:     AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAG                         ATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
genomic: AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAGgtaattatat ... ttcgcttcagATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
EST: gi|31305923|gb|CD391126.1|CD391126
EST:     AGTCATTTGTTGTGCCGCGAACTCTCTCGGTTGAAATGATTTTGGACCAG                         ATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
genomic: AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAGgtaattatat ... ttcgcttcagATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
EST: gi|58020279|gb|CX707021.1|CX707021
EST:     AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAG                         ATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT
genomic: AGTCATTTGTTGTGCCGCAAACTCTCTCGGTTGAAATGATTTTGGACCAGgtaattatat ... ttcgcttcagATATCGATGAACCTAACATTCGATGAGCAACAAGCTCTATATTGGAGGCTT