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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCATGATTGATGCATTCAGGTGGTCTCGTTGTAAGAAGCCTCTGCCACAGAAACTGATGCGTACAATTGGCATCCCTTTGCCTATTGAACATATAGAGgtatttttaaatcacttctcatttattttcaacttgcattttgaatgtctcttgaattttctccctgattcattattgcaatgttactcaaattacgtgcagaatgcatatttaaactttccaattgtatcataatttatattctgcacttgctgtccag

Basic information

species Glycine max
transcript GLYMA10G31960.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51343542|gb|CO984275.1|CO984275
EST:     AGAAACTGATGCGTACAATTGGCATCCCTTTGCCTATTGAACATATAGAG                         TTACTGGAGGAAAATTTGGACTGGGAAGATGTGCAATGGTCGCAAACAGGT
genomic: AGAAACTGATGCGTACAATTGGCATCCCTTTGCCTATTGAACATATAGAGgtatttttaa ... tgctgtccagTTACTGGAGGAAAATTTGGACTGGGAAGATGTGCAATGGTCGCAAACAGGT
EST: gi|208028852|gb|GD828766.1|GD828766
EST:     AGAAACTGATGCGTACAATTGGCATCCCTTTGCCTATTGAACATATAGAG                         TTACTGGAGGAAAATTTGGACTGGGAAGATGTGCAATGGTCGCAAACA
genomic: AGAAACTGATGCGTACAATTGGCATCCCTTTGCCTATTGAACATATAGAGgtatttttaa ... tgctgtccagTTACTGGAGGAAAATTTGGACTGGGAAGATGTGCAATGGTCGCAAACA
EST: gi|208069252|gb|GD869160.1|GD869160
EST:     AGAAACTGATGCGTACAATTGGCATCCCTTTGCCTATTGAACATATAGAG                         TTACTGGAGGAAAATTTGGACTGGGAAGGTGTGCAATGGTCGCAAACAGGT
genomic: AGAAACTGATGCGTACAATTGGCATCCCTTTGCCTATTGAACATATAGAGgtatttttaa ... tgctgtccagTTACTGGAGGAAAATTTGGACTGGGAAGATGTGCAATGGTCGCAAACAGGT
EST: gi|7235227|gb|AW570556.1|AW570556
EST:     AGAAACTGATGCGTACAATTGGCATCCCTTTGCCTATTGAACATATAGAG                         TTACTGGAGGAAAATTTGGACTGGGAAGATGTGCAATGGTCGCAAACAGGT
genomic: AGAAACTGATGCGTACAATTGGCATCCCTTTGCCTATTGAACATATAGAGgtatttttaa ... tgctgtccagTTACTGGAGGAAAATTTGGACTGGGAAGATGTGCAATGGTCGCAAACAGGT
EST: gi|254344049|gb|GR850959.1|GR850959
EST:     AGAAACTGATGCGTACAATTGGCATCCCTTTGCCTATTGAACATATAGAG                         TTACTGGAGGAAAATTTGGACTGGGAAGATGTGCAATGGTCGCAAACAGGT
genomic: AGAAACTGATGCGTACAATTGGCATCCCTTTGCCTATTGAACATATAGAGgtatttttaa ... tgctgtccagTTACTGGAGGAAAATTTGGACTGGGAAGATGTGCAATGGTCGCAAACAGGT
EST: gi|17963267|gb|BM270018.1|BM270018
EST:     AGAAACTGATGCGTACAATTGGCATCCCTTTGCCTATTGAACATATAGAG                         TTACTGGAGGAAAATTTGGACTGGGAAGATGTGCAATGGTCGCAAACAGGT
genomic: AGAAACTGATGCGTACAATTGGCATCCCTTTGCCTATTGAACATATAGAGgtatttttaa ... tgctgtccagTTACTGGAGGAAAATTTGGACTGGGAAGATGTGCAATGGTCGCAAACAGGT