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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTGGGGATGGACATGGGAGAGAGAACTCAAGAACAAACCTCCTCGTAGATGGTCACAGGAAAGGGAAGTTGAGTTGGCAATCAAAGTTATGCACAAGgtaaatagctaaaccttaactgttttttccttttaactgcaaacttgcttcttgttgaaatggttttaaatgatcaaattcctctgtttcttgtagacag...

Basic information

species Glycine max
transcript GLYMA10G31180.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G31180.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM5G846399_T01 (Zea mays), 5'ss of exon 1
TGCTTGGGGATGGACATGGGAGAGAGAACTCAAGAACAAACCTCCTCGTAGATGGTCACAGGAAAGGGAAGTTGAGTTGGCAATCAAAGTTATGCACAAGgta--aatagctaaaccttaactgttttttccttttaactg---caaacttgcttcttgttgaaatggttttaaatgatcaaattcctctgtttcttgtagacag
||| ||||||||||| ||||| |||||| | ||||||||    || ||||  |||||||| ||| |||| ||||||||||| |||||  | ||||||||||||    |||||  |     ||||    |||  ||  |  |    ||  ||  | | |  |  |||    || ||  || |||    |   ||| || |  |   
TGCCTGGGGATGGACGTGGGAAAGAGAAATAAAGAACAAGATGCCACGTAAGTGGTCACAAGAATGGGAGGTTGAGTTGGCTATCAAGATAATGCACAAGgtattggtagctctataaccactgcaggttctgttggatggacttaagattcttccatacttcaatcaccttcaa--attaaacaaatacattttttttcaa---

upper sequence: GLYMA10G31180.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv04s0043g00700.t01 (Vitis vinifera), 5'ss of exon 11
TGCTTGGGGATGGACATGGGAGAGAGAACTCAAGAACAAACCTCCTCGTAGATGGTCACAGGAAAGGGAAGTTGAGTTGGCAATCAAAGTTATGCACAAGgtaaatagctaaaccttaactgttttttccttttaactgcaaacttgcttcttgt-tgaaatggttttaaatgatcaaattcctctgtttcttgtagacag-----
|| |||||| ||||| ||||| | |||||| |||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||| ||||  |||| |  |      | |||      |  || | |   ||||||    || |||| || | |  |    ||| |  ||||  || |    | | |   |   |      
TGTTTGGGGTTGGACTTGGGAAAAAGAACTGAAGAACAAACCTCCTCGTAGTTGGACACAGGAATGGGAAGTTGAGTTGGCAATCAAAGTAATGCTGAAGgcatgttcgcgtatcttg-----tgcttacatcctactgcatttctgattctagtattatttcacattatac-atcatctttcctcatctatatgaattactccta