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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGAAAGGTGGTAAACTTTCAGGAAGTGTTTTCAACATCCTGTTCAATCTAAATAAGTTCATGGCCTTTGAAACTCGTGACCCATTTTTGATCCGTCAGgtgcatgaaatatttgataaaatttattgcattcttgagttagtatgtatgcttggctactgttagtgacttccttggtaattggtatgcatatcttgtgtgaatag

Basic information

species Glycine max
transcript GLYMA10G30930.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G30930.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os10g33680.1 (Oryza sativa), 5'ss of exon 11
CCTGAAAGGTGGTAAACTTTCAGGAAGTGTTTTCAACATCCTGTTCAATCTAAATAAGTTCATGGCCTTTGAAACTCGTGACCCATTTTTGATCCGTCAGgtgcatg-aaatatttgataaaatttattgcattcttgagttagtatgtatgcttggctactgttagtgacttccttggtaattggtatgcatatcttgtgtgaatag
| | ||| |  ||||||| ||||| | | | ||||||||||| |||||||| || || || ||||| |||||||||||||| |||||  | || || ||||||     || |  |||  | ||   | || ||||     | |  || ||    |  | | | |   | |  |  ||  |  |  |                      
CTTAAAACGGTGTAAACTCTCAGGGAATATATTCAACATCCTATTCAATCTCAACAAATTTATGGCATTTGAAACTCGTGATCCATTCCTCATTCGCCAGgtgatcacaacttcttgccataaagcagtgaattcactgttaatcatctaaa--taacaagt-tggatcatctttttatt--tcag----------------------

upper sequence: GLYMA10G30930.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G148323_T01 (Zea mays), 5'ss of exon 11
CCTGAAAGGTGGTAAACTTTCAGGAAGTGTTTTCAACATCCTGTTCAATCTAAATAAGTTCATGGCCTTTGAAACTCGTGACCCATTTTTGATCCGTCAGgtgcatgaaatatttgataaaattta---ttgcattcttgagttagtatgtatgcttggctactgttagtgacttccttggtaattggtatgcatatcttgtgtgaatag
| | ||| |  ||||||| |||||||   | ||||| || || |||||||| || ||||||||||| |||||||||||||| |||||  | || || ||||||  |  |||  || ||||| ||||   ||||   |  |  |||   |  ||  ||||||| ||||  | | |                                    
CTTAAAACGGTGTAAACTCTCAGGAAACATATTCAATATTCTTTTCAATCTCAACAAGTTCATGGCATTTGAAACTCGTGATCCATTCCTCATTCGCCAGgtgattataatccttaataaactttagatttgctgccaagtattaagttaaataattggctaatgtt--taattgtag--------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57574654|gb|CX547629.1|CX547629
EST:     TAAATAAGTTCATGGCCTTTGAAACTCGTGACCCATTTTTGATCCGTCAG                         GAACGTGAGAACCCAACATTGACAGAGTGGGATCGATTTGCTCATCGAGAA
genomic: TAAATAAGTTCATGGCCTTTGAAACTCGTGACCCATTTTTGATCCGTCAGgtgcatgaaa ... gtgtgaatagGAACGTGAGAACCCAACATTGACAGAGTGGGATCGATTTGCTCATCGAGAA
EST: gi|58019797|gb|CX706539.1|CX706539
EST:     TAAATAAGTTCATGGCCTTTGAAACTCGTGACCCATTTTTGATCCGTCAG                         GAACGTGAGAACCCAACATTGACAGAGTGGGATCGATTTGCTCATCGAGAA
genomic: TAAATAAGTTCATGGCCTTTGAAACTCGTGACCCATTTTTGATCCGTCAGgtgcatgaaa ... gtgtgaatagGAACGTGAGAACCCAACATTGACAGAGTGGGATCGATTTGCTCATCGAGAA