Sequence
atgc intronic sequence ATGC exonic sequenceGTATGTGATTTTGGGTTGTCACGGTTGAAGCACAACACTTTTTTGTCATCCAAGTCAACTGCTGGAACGgtgagaatttgagaaaatctttgttattctgtagctcatttgtttaggcacatgcagcatgtgtctgatctgcatttctcttcatttcactgacatgattctgtcaatatgttag
Basic information
species | Glycine max |
transcript | GLYMA10G30070.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G30070.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G08720.1 (Arabidopsis thaliana), 5'ss of exon 10
GTATGTGATTTTGGGTTGTCACGGTTGAAGCACAACACTTTTTTGTCATCCAAGTCAACTGCTGGAACGgtgagaatttgaga-----aaatct--ttgttattctgtagctcatttgtttaggcacatgca-gcatgtgtctgatctgcatttct-cttcatttc-actgacatgattctgtcaatatgttag
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GTCGGTGATTTTGGGTTGTCTCGCTTAAAGCACAATACTTTTTTATCCTCCAAATCAACTGCTGGAACGgtgagaacgcagaacccttaaatctctttactttttgatagaaatgcaactttcctactggcatgcttgt-tataatctggggtacggcttcttctctaatcacatgcattgttaattttaccag
upper sequence: GLYMA10G30070.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv14s0030g01440.t01 (Vitis vinifera), 5'ss of exon 10
GTATGTGATTTTGGGTTGTCACGGTTGAAGCACAACACTTTTTTGTCATCCAAGTCAACTGCTGGAACGgtgagaatttgaga---------aa-----------------atctttgttattctgt--agctcatttgtttaggcacatgcagc-------atgtgtct-gatctgcatttct-cttcatttcactgac-----atgattc---tgtcaatatgttag
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GTATGTGATTTTGGGTTGTCACGCCTGAAGCACAACACATTTTTGTCATCCAAATCAACTGCTGGAACGgtgagaatctgagacttgcattcaagaattgattatgttactatctttattttctttttcatactatttacaaagaacaatccaacttgatgaatatgtcttgatcttgctttctactccatttctgcatctcttcatgatttaagtttctgtttgttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17153163|gb|BM143096.1|BM143096EST: CGG-T-CAGCCCACAACACTTTTTTGTCATCCAAGTCAACTGCTGGAACG CCGGAATGGATGGCTCCTGAAGTTCTCCGCAATGAGCCCTCAAATGAGAA
genomic: CGGTTGAAG--CACAACACTTTTTTGTCATCCAAGTCAACTGCTGGAACGgtgagaattt ... aatatgttagCCGGAATGGATGGCTCCTGAAGTTCTCCGCAATGAGCCCTCAAATGAGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTATGTGATTTTGGGTTGTCACGGTTGAAGCACAACACTTTTTTGTCATCCAAGTCAACTGCTGGAACGgtgagaatttgagaaaatctttgttattctgtagctcatttgtttaggcacatgcagcatgtgtctgatctgcatttctcttcatttcactgacatgattctgtcaatatgttag
- - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA