Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTTTGATTCAGCAAAAGCTTTGGCTTTCGAGAATGTTCCAACTCGAGATAAGgtgagtttgaagatgctttctattcttttgtcatgtatcactcagaatgtctgcttattttttatagactctgatagtactggatcacctaagtgcttattttgtctatggtcttgtctagttctttcacaatgatgaatgtgttcgtaacaaattgcag

Basic information

species Glycine max
transcript GLYMA10G29770.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G29770.1 (Glycine max), 5'ss of exon 11
lower sequence: AT3G05190.1 (Arabidopsis thaliana), 5'ss of exon 10
GATGTTTGATTCAGCAAAAGCTTTGGCTTTCGAGAATGTTCCAACTCGAGATAAGgtgagtttgaagatgctttctattcttttgtcatgtatcactcagaatgtctgcttattttttatagactctgatagtactggatcacctaagtgcttattttgtctatggtcttgtctagttctttcacaatgatgaatgtgttcgtaacaaattgcag
| |||||||||||||||| ||| |||||||||| ||||||||| | || ||  |||| ||  |   |||| |   || |  | |||  ||| ||  | | || |    | |       ||||  | | || ||     | ||   |                                                                     
GTTGTTTGATTCAGCAAAGGCTCTGGCTTTCGATAATGTTCCAGCGCGTGAAGAGgtaagcatct-gatgatcg-tagtgctatgttttgt-tctgttaaaacg---acgttaccacgatagctttttattgtggcataacatgcag--------------------------------------------------------------------

upper sequence: GLYMA10G29770.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv14s0128g00100.t01 (Vitis vinifera), 5'ss of exon 20
GATGTTTGATTCAGCAAAAGCTTTGGCTTTCGAGAATGTTCCAACTCGAGATAAGgtgag--tttgaagatgctttctattcttttgtcatgtatcactcagaatgtctgcttattttttatagactctgatagtac-tggatcac-ctaagtgcttattttgtctatggtcttgtct--------agttct-ttcacaatgatga---atg--tgttcgtaacaaattgcag
||||||||| |||||||||||  |||||||| | |||||||||||||| ||  ||||| |  | |  |||||  || |  |  |||    | |       |   || |||    |  ||  |   || |   |||   | | ||||  ||   | || || | ||||| | ||| |          |||||| || | | | ||||   |||  | |  | | |||| |||||
GATGTTTGACTCAGCAAAAGCACTGGCTTTCAACAATGTTCCAACTCGTGAAGAGgtgtggatctttagatgaattttgattgtttcatttatgagtacaatgttgcctgtagctccttacttctctttctgagtctgtaggtcacattagaagtttgttctttctattgccttatgcctgacagaagttctgtttatattcatgacacatgactatatgcatcaaaatgcag