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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatcggacttcttatcaaacttttagtatcccaccttaggaaaaaagataataatagtgcttccttggttttgcaagtttgtgtttcagtgtttggcaattttatgttttctaatctaattattcaatgtttgtgtctcaacatctgattatgtattgagtattttgtgatttttgctttgtgtggtgtag

Basic information

species Glycine max
transcript GLYMA10G28530.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28530.2 (Glycine max), 5'ss of exon 11
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 5'ss of exon 11
ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatcggacttcttatcaaacttttagtatcccaccttaggaaaaaagataataatagtgct-tccttggttttgcaagtttgtgtttcagtgtttggcaattttatgttttctaatctaattattcaatgtttgtgtctcaacatctgattatgtattgagtattttgtgatttttgctttgtgtggtgtag
|| |||||||| |||||||||||||| |||||||||||||| ||||||||||| || ||||| |||||  | |||||||||||||||||||    | |  || |     || |  ||  |||   | |         |  |  |  |||| |     |  ||  || |||    ||||  | ||  ||||                                                                                           
ATATTCCATAAACGCATGCCTCCAGAAGCTGTTGATTTGGTTTCAAGACTACTGCAGTACTCTCCTAATCTACGGTGCACAGCTgtgagtac---attaattttttggtttctcataatccattcttgtgtgttctgtctttttgttgctgtttcctgcatttaaaattt---cttcaa-gattaacaatc------------------------------------------------------------------------------------------

upper sequence: GLYMA10G28530.2 (Glycine max), 5'ss of exon 11
lower sequence: PP1S74_168V6.1 (Physcomitrella patens), 5'ss of exon 9
ATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatcggacttcttatcaaacttttagtatcccaccttaggaaaaaagataataatagtgcttccttggttttg-caagtttgtgtttcagtgtttggcaattttatgttttctaatctaattattcaatgtttgtgtctcaacatctgattatgtattgagtattttgtgatttttgctttgtgtggtgtag
 | ||||| ||||||||||||||||| || || ||| |||| ||||| ||||| || ||||| || ||  |||||||||  |||||||||   |          |    ||||  | |         | |     |||      ||  | || ||||||  |   | | | | | ||  |   ||| ||    |||||                                                                                   
GTTTTCCACAAGCGCATGCCTCCAGAAGCAGTAGATCTGGTTTCAAGGCTACTTCAGTACTCTCCGAATCTGCGGTGCAATGCTgtgagtgatga---------cggggtttttctgttgt------gaagtgttgatcgcg-cagaccatcgttggttacgatgaatctttctctctattggtgggaacaggatgttga---------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23729240|gb|BU762707.1|BU762707
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatcg ... tgtggtgtagTTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
EST: gi|19453358|gb|BM954768.1|BM954768
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatcg ... tgtggtgtagTTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
EST: gi|5820386|gb|AI988592.1|AI988592
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatcg ... tgtggtgtagTTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
EST: gi|214005861|gb|DB988702.1|DB988702
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatcg ... tgtggtgtagTTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
EST: gi|31307101|gb|CD392304.1|CD392304
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatcg ... tgtggtgtagTTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
EST: gi|151395928|gb|EV265805.1|EV265805
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatcg ... tgtggtgtagTTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
EST: gi|21677182|gb|BQ629533.1|BQ629533
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatcg ... tgtggtgtagTTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
EST: gi|254344096|gb|GR851006.1|GR851006
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatcg ... tgtggtgtagTTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
EST: gi|6566727|gb|AW234359.1|AW234359
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         NTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCANATTCT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatcg ... tgtggtgtagTTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
EST: gi|9983502|gb|BE657610.1|BE657610
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatcg ... tgtggtgtagTTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
EST: gi|27426035|gb|CA937555.1|CA937555
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatcg ... tgtggtgtagTTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
EST: gi|16104780|gb|BI892520.1|BI892520
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatcg ... tgtggtgtagTTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
EST: gi|18039146|gb|BM307440.1|BM307440
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatcg ... tgtggtgtagTTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
EST: gi|151411363|gb|EV281174.1|EV281174
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCGAATTCT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatcg ... tgtggtgtagTTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
EST: gi|214004064|gb|DB984970.1|DB984970
EST:     TTTGGTATCAAGACTACTACAATACTCCCCTAACTAT-CGGTGCACAGCT                         TTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
genomic: TTTGGTATCAAGACTACTACAATACTCCCCTAACT-TGCGGTGCACAGCTgtgagtatcg ... tgtggtgtagTTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
EST: gi|207786927|gb|GD755386.1|GD755386
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatcg ... tgtggtgtagTTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
EST: gi|22929643|gb|BU546782.1|BU546782
EST:     ATTTGGTATCAAGACTACTACAATACTCCCNNAACTTGCGGTGCACAGCT                         TTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatcg ... tgtggtgtagTTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
EST: gi|7926372|gb|AW832398.1|AW832398
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTAGATGCCTTGACACATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatcg ... tgtggtgtagTTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
EST: gi|24206278|gb|BU965531.1|BU965531
EST:     ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCT                         TTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT
genomic: ATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTgtgagtatcg ... tgtggtgtagTTAGATGCCTTGACGCATCCTTTCTTTGACGAACTTCGTGATCCAAATTCT