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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTGGAGGAGCTAAATATGACCATGGACCAATTTATTGACTTATGCATTCTTTCTGGCTGTGATTATTGTGACAGCATTCGAGgtatatttttagccatttttatttgtatgatgctttgtctaagtttggttttatgatttctgtatgaactctatgtgcatatatttatatagtataaatgataaatgatgtgtggtgcag

Basic information

species Glycine max
transcript GLYMA10G28200.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28200.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os05g46270.1 (Oryza sativa), 5'ss of exon 11
ATTTTGGAGGAGCTAAATATGACCATGGACCAATTTATTGACTTATGCATTCTTTCTGGCTGTGATTATTGTGACAGCATTCGAGgtatatttttagccatttttatttgtatgatgctttgtctaagtttggttttatgatttctgtatgaactctatgtgcatatatttatatagtataaatgataaatgatgtgtggtgcag
 |||||||||||||  |  | || ||||||||||| |||||||| ||||| || ||||| ||||| |||||||| ||||||  |||||| |||        |||   |  | | |||  | || |   | |   ||  || || ||  |    || |   |||| |  ||| |     |  ||  ||   || | |||     ||
GTTTTGGAGGAGCTTGAACTCACTATGGACCAATTCATTGACTTGTGCATCCTATCTGGATGTGACTATTGTGATAGCATTAAAGgtattttt------gctttccctcttctcatgagtagtattcctataaattcttgcttgcttgaatttctgtccatgcaaactttttttcctaaccaactatgtgtgct-tgtccgctag

upper sequence: GLYMA10G28200.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv14s0060g00210.t01 (Vitis vinifera), 5'ss of exon 11
ATTTTGGAGGAGCTAAATATGACCATGGACCAATTTATTGACTTATGCATTCTTTCTGGCTGTGATTATTGTGACAGCATTCGAGgtat-atttttagccatttttatttgtatgatgctttgtctaagtttggttttatgatttctgtatgaactctatgtgcatatatttatatagtataaatgataaatgatgtgtggtgcag--
|||||||||||||| ||| | |||||||| ||||| |||||| | ||||||||||| || ||||||||||||||||||||||||||||| | | | |   ||| ||           | | | || ||   ||  | |||| ||| |        || || || | ||||| | | | |  | | ||  |   |||  |  || ||  
ATTTTGGAGGAGCTGAATCTTACCATGGATCAATTCATTGACCTGTGCATTCTTTCAGGGTGTGATTATTGTGACAGCATTCGAGgtattaatatcaaagattctt-----------ggtctatcaaa---tgcatatatgtttttt--------tccatatgtagatattcagaaaatg-ataagactatccatgcatcttgtagta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193301428|gb|FK266825.1|FK266825
EST:     TATTGACTTATGCATTCTTTCTGGCTGTGATTATTGTGACAGCATTCGAG                         GGATTGGGGGACTGACAGCTTTGAAACTCATACGTCAACATGGACTCTATT
genomic: TATTGACTTATGCATTCTTTCTGGCTGTGATTATTGTGACAGCATTCGAGgtatattttt ... tgtggtgcagGGATTGGGGGACTGACAGCTTTGAAACTCATACGTCAACATGG-CTCTATT
EST: gi|192308345|gb|FK000897.1|FK000897
EST:     TATTGACTTATGCATTCTTTCTGGCTGTGATTATTGTGACAGCATTCGAG                         GGATTGGGGGACTGACAGCTTTGAAACTCATACGTCAACATGGCTCTATTG
genomic: TATTGACTTATGCATTCTTTCTGGCTGTGATTATTGTGACAGCATTCGAGgtatattttt ... tgtggtgcagGGATTGGGGGACTGACAGCTTTGAAACTCATACGTCAACATGGCTCTATTG