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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGACACACCGGCGATACCTGGCTCGTGACGAGGGAACTTATGGTCCGATGCCGCGCAGAATCCCAAAAGGGTTATTGGGAATGCCATTCAATACCACAgtaagtctacttccacaagaaaataactggttcagttatggaaacactctgctatgcttttagaaggcactgattaactaaagccataaaccaataaaactttcag

Basic information

species Glycine max
transcript GLYMA10G10990.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G10990.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv08s0032g00800.t01 (Vitis vinifera), 5'ss of exon 11
AAAGACACACCGGCGATACCTGGCTCGTGACGAGGGAACTTATGGTCCGATGCCGCGCAGAATCCCAAAAGGGTTATTGGGAATGCCATTCAATACCACAgtaagtctacttccacaagaaaataactggttcagt-tatggaaacactctgctatgcttttagaaggcactgattaactaaagccataaaccaataaaactttcag
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AAAAACACACAGGCGTTATCTTGCTCGAGATAATGGCACGTATGGACCAATGCCTCGCAGAACACCTAAGGGATTATTGGGAATGCCATTCAATACAACTgtaagttt--taccataatcag-tagatggttaagtatttagcgattttttatttggtttttagct--tagtgaatgaactggatcatgtaatgatggaacttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31457295|gb|CD399323.1|CD399323
EST:     TGCCGCGCAGAATCCCAAAAGGGTTATTGGGAATGCCATTCAATACCACA                         GGCATAGATGGTCTTTACTGTGTTGGTGATAGCTGCTTCTCTGGACAAGGT
genomic: TGCCGCGCAGAATCCCAAAAGGGTTATTGGGAATGCCATTCAATACCACAgtaagtctac ... aaactttcagGGCATAGATGGTCTTTACTGTGTTGGTGATAGCTGCTTCCCTGGACAAGGT