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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATAATGAAACGTTTACGGCATCCAAACATTGTTTTGTTTATGGGGGCAGTCACTCAGCCTCCTAACTTATCAATTGTCACAGAATATTTATCAAGGTTgtactcctctacatgttcctcatctttttccctcaaagagggaagtttttcaaggctatggataataggatattttgaccttgagattctaagagttcttgacctaagtgcag

Basic information

species Glycine max
transcript GLYMA10G07610.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G07610.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G059671_T01 (Zea mays), 5'ss of exon 8
---CAATAATGAAACGTTTACGGCATCCAAACATTGTTTTGTTTATGGGGGCAGTCACTCAGCCTCCTAACTTATCAATTGTCACAGAATATTTATCAAGGTTgtactcctctacatgttcctcatctttttccctcaaagagggaagtttttcaaggctatggataataggatatttt-gaccttgagattctaagagttcttgacctaagtgcag
   |||| |||| | |||| || ||||| ||||||||| |  ||||||| || ||||||||||| |||||| | |||||||| || |||||  ||||||||| ||   | |    |  |||   ||   |||   | ||| |    |  | | ||   |||  | || |   |  ||   || ||| |  || |    ||| |    ||| ||||||
TTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGTGCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAGgt-gtgtcctt----actttctgaatgccttt---tgaaatatactatctgtgcacctctagagttagtccaaggttccagaacttaaccttttt---gtttt----ctatgtgcag

upper sequence: GLYMA10G07610.1 (Glycine max), 5'ss of exon 11
lower sequence: AT5G03730.2 (Arabidopsis thaliana), 5'ss of exon 9
---CAATAATGAAACGTTTACGGCATCCAAACATTGTTTTGTTTATGGGGGCAGTCACTCAGCCTCCTAACTTATCAATTGTCACAGAATATTTATCAAGGTTgtactcctctacatgttcctcatctttttccctcaaagagggaagtttttcaaggctatggataataggatattttgaccttgagattctaagagttcttgacctaagtgcag
   | |||||||||||  | || || || ||||||||| | || ||||| || |||||||| ||||| || || ||||| || ||||||||||| |||||||   | | ||       ||    |  |||      |  || |   | ||||    | ||||    | |   |||   |||  |     ||| || ||                  
TTGCGATAATGAAACGCCTTCGCCACCCTAACATTGTTCTCTTCATGGGTGCGGTCACTCAACCTCCAAATTTGTCAATAGTGACAGAATATTTGTCAAGgtacaattactt---ggatttggaaggtttgatgtactgagtgtagaatttt---ggcctataatgactctaataccatgatttct---ttcaaacag------------------