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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGTGCAGATCCTGTTTGTGTCACGGAGGATGGAAAAGTAAAATTGTATCCTGTGATACTATTACCTAAAGAGAAATTAATTGATACAAATGGAGCAGgtataaacctattgtttttaatatttaaatatgtacagttaagtttatggccaatttattacattttgatgatagtgacaagctcgattccaattttgtctcttttaaatgtgtgtggaaacttaaaaaattaatgttatatacttatattcttttgtttttgcag

Basic information

species Glycine max
transcript GLYMA10G06580.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58024551|gb|CX711292.1|CX711292
EST:     TCCTGTGATACTATTACCTAAAGAGAAATTAATTGATACAAATGGAGCAG                         GAGATGCTTTTGTGGGAGGATTTCTTTCGCAATTGGTTAAGCAGAAGCCCA
genomic: TCCTGTGATACTATTACCTAAAGAGAAATTAATTGATACAAATGGAGCAGgtataaacct ... gtttttgcagGAGATGCTTTTGTGGGAGGATTTCTTTCGCAATTGGTTAAGCAGAAGCCCA
EST: gi|298169113|gb|HO020473.1|HO020473
EST:     TCCTGTGATACTATTACCTAAAGAGAAATTAATTGATACAAATGGAGCAG                         GAGATGCTTTTGTGGGAGGATTTCTTTCGCAATTGGTTAAGCAGAAGCCCA
genomic: TCCTGTGATACTATTACCTAAAGAGAAATTAATTGATACAAATGGAGCAGgtataaacct ... gtttttgcagGAGATGCTTTTGTGGGAGGATTTCTTTCGCAATTGGTTAAGCAGAAGCCCA
EST: gi|12772068|gb|BG236995.1|BG236995
EST:     TCCTGTGATACTATTACCTAAAGAGAAATTAATTGATACAAATGGAGCAG                         GAGATGCTTTTGTGGGAGGATTTCTTTCGCAATTGGTTAAGCAGAAGCCCA
genomic: TCCTGTGATACTATTACCTAAAGAGAAATTAATTGATACAAATGGAGCAGgtataaacct ... gtttttgcagGAGATGCTTTTGTGGGAGGATTTCTTTCGCAATTGGTTAAGCAGAAGCCCA
EST: gi|209709322|gb|BW680987.1|BW680987
EST:     AGAGAAATTAATTGATACAAATGGAGCAG                         GAGATGCTTTTGTGGGAGGATTTCTTTCGCAATTGGTTAAGCAGAAGCCCA
genomic: AGAGAAATTAATTGATACAAATGGAGCAGgtataaacct ... gtttttgcagGAGATGCTTTTGTGGGAGGATTTCTTTCGCAATTGGTTAAGCAGAAGCCCA
EST: gi|22525420|gb|BU084231.1|BU084231
EST:     TCCTGTGATACTATTACCTAAAGAGAAATTAATTGATACAAATGGAGCAG                         GAGATGCTTTTGTGGGAGGATTTCTTTCGCAATTGGTTAAGCAGAAGCCCA
genomic: TCCTGTGATACTATTACCTAAAGAGAAATTAATTGATACAAATGGAGCAGgtataaacct ... gtttttgcagGAGATGCTTTTGTGGGAGGATTTCTTTCGCAATTGGTTAAGCAGAAGCCCA
EST: gi|16348521|gb|BI974116.1|BI974116
EST:     TCCTGTGATACTATTACCTAAAGAGAAATTAATTGATACAAATGGAGCAG                         GAGATGCTTTTGTGGGAGGA
genomic: TCCTGTGATACTATTACCTAAAGAGAAATTAATTGATACAAATGGAGCAGgtataaacct ... gtttttgcagGAGATGCTTTTGTGGGAGGA
EST: gi|19054142|gb|BM732809.1|BM732809
EST:     TCCTGTGATACTATTACCTAAAGAGAAATTAATTGATACAAATGGAGCAG                         GAGATGCTTTTGTGGGAGGATTTCTTTCGCAATTGGTTAAGCAGAAGCCCA
genomic: TCCTGTGATACTATTACCTAAAGAGAAATTAATTGATACAAATGGAGCAGgtataaacct ... gtttttgcagGAGATGCTTTTGTGGGAGGATTTCTTTCGCAATTGGTTAAGCAGAAGCCCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGGTGCAGATCCTGTTTGTGTCACGGAGGATGGAAAAGTAAAATTGTATCCTGTGATACTATTACCTAAAGAGAAATTAATTGATACAAATGGAGCAGgtataaacctattgtttttaatatttaaatatgtacagttaagtttatggccaatttattacattttgatgatagtgacaagctcgattccaattttgtctcttttaaatgtgtgtggaaacttaaaaaattaatgttatatacttatattcttttgtttttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG