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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTCGAGTTTGGGATGTGCTACTATTTGAAGGGAACCGTGTTATGCTATTTCGAACAGCACTGGCTCTAATGGAATTATATGgtattgaattttgatttcctgtgtttatgagtgatctgagcaaactagcatctgtaagtagtaaactaaattaaattattgtttatatcttccttaatgtaacacaatttttatctcgtattctag

Basic information

species Glycine max
transcript GLYMA10G05490.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G05490.1 (Glycine max), 5'ss of exon 11
lower sequence: AT2G37290.1 (Arabidopsis thaliana), 5'ss of exon 10
TTCTTCGAGTTTGGGATGTGCTACTATTTGAAGGGAACCGTGTTATGCTATTTCGAACAGCACTGGCTCTAATGGAATTATATGgtattgaatt--ttgatttcctgtgtttatga---gtgatctgagcaaactagcatctgtaagt---agtaaactaaatta--aattattgtttatatcttccttaatgtaacacaatttttatctcgtattctag
|||| ||  | ||||||||||| || |||||||| ||||||||  || | ||  |||||||| | ||| |||||||| |||||||||||    |  | ||  |  ||| | ||| |   |||   |||   || |||| | |||   |   || |||| |||||   | | | | ||| ||| |||||||                              
TTCTGCGGATGTGGGATGTGCTTCTCTTTGAAGGAAACCGTGTAGTGTTGTTCAGAACAGCATTTGCTATAATGGAACTATATGgtattttgctgatagaacttttgtatgtatcaagtgtgtgatgattgaattagc-tttgtggttcaaaggaaacaaaattttcagtcactctttgtat-ttccttag-----------------------------

upper sequence: GLYMA10G05490.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv08s0040g03050.t01 (Vitis vinifera), 5'ss of exon 10
TTCTTCGAGTTTGGGATGTGCTACTATTTGAAGGGAACCGTGTTATGCTATTTCGAACAGCACTGGCTCTAATGGAATTATATGgtatt--gaattttgatttcctgtgtttatgagtgatctgagcaaactagcatctgtaagtagtaaactaaattaaattattgtttatatcttccttaatgtaacacaatttttatctcgtattctag
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||| | ||||| ||||||||||    |||   | |  | | ||||   |||    | || ||| | || |     | |  | | ||||   ||       |||| | | |      | | || |||| |   | ||| |||      
TTCTTCGAGTTTGGGATGTGCTTCTATTTGAAGGAAACCGTGTTATGCTATTTCGGACAGCACTTGCTTTGATGGAGTTATATGgtacacagaaaaataaacttcagtgtc--tgaactctttg-gcacaataac-----tcacaatttaactctgtttttaggctgttcagagccatgaaattctatcacattcaatttcttgtag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193493307|gb|FK460057.1|FK460057
EST:     GAACCGTGTTATGCTATTTCGAACAGCACTGGCTCTAATGGAATTATATG                         GTCCTGCATTAGTTA
genomic: GAACCGTGTTATGCTATTTCGAACAGCACTGGCTCTAATGGAATTATATGgtattgaatt ... cgtattctagGTCCTGCATTAGTTA