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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAGGAAGTAGTATCATGCCTgtaagatcctcatgctgactgaatttaaatttgttacacaaaccagttgttttcttttttacttgctatagttcattgttttatttttgttacaattggaatttgactctaagcacaactgtattctgtttcag

Basic information

species Glycine max
transcript GLYMA10G02040.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G02040.1 (Glycine max), 5'ss of exon 11
lower sequence: AT2G47510.1 (Arabidopsis thaliana), 5'ss of exon 12
TGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAGGAAGTAGTATCATGCCTgtaagatcctcatgctgactgaatttaaatttgttacacaaaccagttgttttcttttttacttgctatagttcattgttttatttttgttacaattggaatttgactctaagcacaactgtattctgtttcag
||| ||| | || ||||||||||||||  | || |||||||| || |||||||| |||||||||||||||                |||||  ||  ||  |   |    | ||  |||||||||| ||| | | |  ||||    |  |||||| |  |  |   |                                  
TGGCCCAAGATGTGGTCTTGGTGAACTTGTACTACCTGAAAATGAGCCAGGAAGCAGTATCATGCCTgta----------------tgaatgcaatcttcctttgctcttctgtccttttctttttcactagttttgattca--aatgaatttttatctctttctcag---------------------------------

upper sequence: GLYMA10G02040.1 (Glycine max), 5'ss of exon 11
lower sequence: AT5G50950.2 (Arabidopsis thaliana), 5'ss of exon 11
TGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAGGAAGTAGTATCATGCCTgtaagatcctcatgctgactgaatttaaatttgttacacaaaccagttgttttcttttttacttgctatagttcattgttttatttttgttacaattggaatttgactctaagcacaactgtattctgtttcag
||||||| | || ||||||||||||||   ||| ||||| || ||||||||||| ||||| ||||||||| ||     ||  |  |  |   |   | |||         | |  | | |   | | || |  |||  ||||| | |||   ||   |  ||||  ||| |  |||| ||                     
TGGTCCAAGATGTGGTCTTGGTGAACTTTCTCTGCCTGAGAATGAACCAGGAAGCAGTATTATGCCTgtatgaatgcaattttttcctatggttcttatgtcctttccctctgcggctctgcctat-accttttatttttcatagattttgattcaattgaattttaatctatctctcag---------------------

upper sequence: GLYMA10G02040.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv07s0005g00880.t01 (Vitis vinifera), 5'ss of exon 12
TGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAGGAAGTAGTATCATGCCTgtaagatcctcatgctgactgaatttaaatttgttacacaaaccagttg---ttttcttttttacttgctatagttc--attgttttatttttgttacaattggaatttgactctaagcacaactgtattctgtttcag
||||||||| || || ||||||||||||||||||||||||||||| ||||| || ||||| |||||||||| ||||| ||         || ||  ||| | |||  ||  || ||   |||||  ||  |||||||| | ||   |||  ||||||  |  |  |  |    ||  | |  |                       
TGGTCCACGTTGTGGCCTTGGTGAACTCATTCTTCCTGAAAACGAGCCAGGCAGCAGTATTATGCCTgtaaaatcctgatctctttcccatatatttttatgacagtaaaaagatgatattttcacttgcacttgctacatttaggattcatttattcatcctttagcttt--ttctatttcag----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254343541|gb|GR857297.1|GR857297
EST:     TTGGTGAACTCATTCTT-CTGAAAACGAACCAGGAAGTAGTATCATGCCT                         GGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAG
genomic: TTGGTGAACTCATTCTTCCTGAAAACGAACCAGGAAGTAGTATCATGCCTgtaagatcct ... tctgtttcagGGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAG
EST: gi|254343540|gb|GR857296.1|GR857296
EST:     TTGGTGAACTCATTCTTCCTGAAAACGAACCAGGAAGTAGTATCATGCCT                         GGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAG
genomic: TTGGTGAACTCATTCTTCCTGAAAACGAACCAGGAAGTAGTATCATGCCTgtaagatcct ... tctgtttcagGGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAG
EST: gi|58014928|gb|CX701670.1|CX701670
EST:     TTGGTGAACTCATTCTTCCTGAAAACGAACCAGGAAGTAGTATCATGCCT                         GGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCNCAG
genomic: TTGGTGAACTCATTCTTCCTGAAAACGAACCAGGAAGTAGTATCATGCCTgtaagatcct ... tctgtttcagGGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAG