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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTTCACAAGCGCTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatatagttgtattatgatttatggaagcttttaaagacactttaaatccggttgagtacattaaactgtcatgttcatgattattttatggctg...

Basic information

species Glycine max
transcript GLYMA10G01280.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G01280.2 (Glycine max), 5'ss of exon 11
lower sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 11
ATCTTTCACAAGCGCTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatatagt-tgtattatgatttatggaagcttt-taaagacactttaaatccggttgagtacattaaactgtcatgttcatgattattttatggctg
|| || || |||||  | || |||||||| || ||||| |||||||| || ||||| |||||||| || |||||  ||||||||||||||| || |  | | | ||||  |||| || | || |      | |||   |    |||  | | |    |  |   || |      ||||| ||  | 
ATATTCCATAAGCGGATGCCCCCTGAGGCCGTTGATCTTGTCTCAAGACTGCTGCAGTACTCTCCGAACCTTCGTAGCACAGCTgtgagtacattgaatttctaatgagctatgcaatcattattgttctagttttgctgtctttgcttccttctggcaatgccgtactaagccatttt-tgctt-

upper sequence: GLYMA10G01280.2 (Glycine max), 5'ss of exon 11
lower sequence: EFJ10962 (Selaginella moellendorffii), 5'ss of exon 10
ATCTTTCACAAGCGCTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatatagttgtattatgatttatggaagcttttaaagacactttaaatccggttgagtacattaaactgtcatgttcatgattattttatggctg
 | ||||||||| |  | ||||| |||||||||||||| ||||| || ||||| |||||||| || ||||| || || |   | || ||| | |            | |  |  |  |||| || |   |  | |  | ||| |  |||| |  || |                          
GTGTTTCACAAGAGAATGCCTCCGGAGGCTGTGGATCTTGTCTCGAGACTACTCCAATACTCGCCTAATCTGCGCTGTAGTTCAgtaagtttct--------cccaaatcgtcca--ctttgaaggg--ccctgacactggtggtatacacttcacag--------------------------

upper sequence: GLYMA10G01280.2 (Glycine max), 5'ss of exon 11
lower sequence: EFJ04915 (Selaginella moellendorffii), 5'ss of exon 10
ATCTTTCACAAGCGCTTACCTCCTGAGGCTGTGGATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatatagttgtattatgatttatggaagcttttaaagacactttaaatccggttgagtacattaaactgtcatgttcatgattattttatggctg
 | ||||||||| |  | ||||| |||||||||||||| ||||| || ||||| |||||||| || ||||| || || |   | || ||| | |            | |  |  |  |||| ||   |||  | |  | ||| |  |||| |  || |                          
GTGTTTCACAAGAGAATGCCTCCGGAGGCTGTGGATCTTGTCTCGAGACTACTCCAATACTCGCCTAATCTGCGCTGTAGTTCAgtaagtttct--------cccaaatcgtcca--ctttgaagagcac--tgacactggtggtatacacttcacag--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208323313|gb|GE125650.1|GE125650
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACC
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACC
EST: gi|208207665|gb|GE007586.1|GE007586
EST:     CTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACC
genomic: CTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACC
EST: gi|193510907|gb|FK471325.1|FK471325
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACC
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACC
EST: gi|208280495|gb|GE075023.1|GE075023
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACC
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACC
EST: gi|151393723|gb|EV263598.1|EV263598
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACC
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACC
EST: gi|9983961|gb|BE658069.1|BE658069
EST:     TCGATGCACAGCN                         CTGGAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACC
genomic: TCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACC
EST: gi|14991512|gb|BI317185.1|BI317185
EST:     CTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACC
genomic: CTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACC
EST: gi|5175344|gb|AI759677.1|AI759677
EST:     CCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACC
genomic: CCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACC
EST: gi|208161219|gb|GD961741.1|GD961741
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACC
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACC
EST: gi|19944926|gb|AB082946.1|AB082946
EST:     ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCT                         CTGGAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACC
genomic: ATCTCGTCTCAAGGCTACTGCAATACTCTCCAAATCTTCGATGCACAGCTgtgagtatat ... tgctatgcagCTGGAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACC