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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGTCTGGCAACATTGGCAAACATGGCACCTCATGTCCACCGTTTGAGTGCATATGCATCTCAGAGACTAGTCAGCCTCTTTGACATGCTATCACGAAAgtatgttgccagtctttctgggctttcataaaaaaactatattcattattcaccaaaaaaaaaaaactatacatttcatatttacatcttgaaatgagtgatttcttgtataatgttgattctaatgttgattatggttag

Basic information

species Glycine max
transcript GLYMA10G00550.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G00550.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os01g56630.2 (Oryza sativa), 5'ss of exon 11
CATGTCTGGCAACATTGGCAAACATGGCACCTCATGTCCACCGTTTGAGTGCATATGCATCTCAGAGACTAGTCAGCCTCTTTGACATGCTATCACGAAAgtatgttg--ccagtctttctgggctttcataaaaaaactatattcattattcaccaaaaaaaaaaaactatacatttcatatttacatcttgaaatgagtgatttcttgtataatgttgattctaatgttgattatggttag
  || || ||||   | ||||| ||||| |||||||| ||  |  ||||||||||||||||||| || || || ||||||||||||||||| || || ||||||| |    || |||||||     || ||  |    ||  | || ||  | ||  | ||   | | ||| |  |  | ||| | |  |||  |   |    | |   |                                 
ACTGCCTTGCAATTCTAGCAAATATGGCCCCTCATGTGCATAGGCTGAGTGCATATGCATCTCAAAGGCTGGTTAGCCTCTTTGACATGCTCTCTCGCAAgtatgctcgctcaatctttctcccagtttatttac---cttgaatcttttgttac--ataagtgacacctaaagttaccttatcttctgcttttatgcaacattcttcag---------------------------------

upper sequence: GLYMA10G00550.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G04200.1 (Arabidopsis thaliana), 5'ss of exon 11
CATGTCTGGCAACATTGGCAAACATGGCACCTCATGTCCACCGTTTGAGTGCATATGCATCTCAGAGACTAGTCAGCCTCTTTGACATGCTATCACGAAAgtatgttgccagtctttctgggcttt----cataaaaaaactatattcattattcaccaaaaaaaaaaaactatacatttcatatttacatcttgaaatgagtgatttcttgtataatgttgattctaatgttgattatggttag
| || || || || ||||| |||||||||||||||| ||| | ||| ||||||||||| || ||||| || |||||||| ||  ||||||| || ||||||||||     |||   ||     |||    | | | ||| || | ||  |   |   |    | ||   |  ||  |||   ||   |||                                                       
CTTGCCTTGCTACGTTGGCTAACATGGCACCTCATGCCCATCATTTAAGTGCATATGCCTCACAGAGGCTTGTCAGCCTTTTCTACATGCTTTCTCGAAAgtatgcaattagttcctcgtctttttatgacttcataaatctgtttttgtacatattcctgtataacggatcatgaattgtttaac-acag------------------------------------------------------