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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTGATATGCTTGAGGTGGGAAATGGAGGGATGACAAAAAATGAATATACTGTTCACTTCAGTTTATGGGCCCTTTCCAAGgtaatacttttattcttttgttttccaatatactgatttatgttaaagcatatataaggcttttttcctttcttttttttcctcatgcaaaggtttattgcag

Basic information

species Glycine max
transcript GLYMA09G40990.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G40990.1 (Glycine max), 5'ss of exon 11
lower sequence: AT5G08380.1 (Arabidopsis thaliana), 5'ss of exon 11
ATCCTGATATGCTTGAGGTGGGAAATGGAGGGATGACAAAAAATGAATATACTGTTCACTTCAGTTTATGGGCCCTTTCCAAGgtaatacttttattcttttgttttccaatatactgatttatgttaaagcatatataaggcttttttcctttcttttttttcctca-tgcaaaggtttattgcag
| || ||||||||||| |||||||||||||||||||||||| | || || |  || || |||||  |||||||  | || |||||||    | |||||      |     | | |||   ||     ||   |||| |||| ||     |  |  | | | |   ||| ||||              
ACCCGGATATGCTTGAAGTGGGAAATGGAGGGATGACAAAAGACGAGTACATAGTCCATTTCAGCATATGGGCAATCTCAAAGgtaagctatatattcccgaaata---gagaaactctcttcaaacaacatatat-taagtctgaaaccaatgatgtatatatatcactgcag-------------

upper sequence: GLYMA09G40990.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv10s0071g01100.t01 (Vitis vinifera), 5'ss of exon 11
ATCCTGATATGCTTGAGGTGGGAAATGGAGGGATGACAAAAAATGAATATACTGTTCACTTCAGTTTATGGGCCCTTTCCAAGgtaatacttttattcttttgttttccaatatactgatttatgttaaagcatatataaggcttttttcctt---tcttttttttcctcatgcaaaggtttattgcag
||||||| ||||||||||| |||||||| || ||||| ||  ||||||| |  || ||||||||  |||||||  ||||||||||       | |   ||   | ||                       ||| ||  | | ||| |||||     |||  ||  |   ||    | |    |||||||
ATCCTGACATGCTTGAGGTAGGAAATGGGGGAATGACTAATGATGAATACATAGTCCACTTCAGCATATGGGCTATTTCCAAGgtggggtcctgaaatttccttctttt---------------------gcacatggatgccttctttcccagagtctgcttgctaaccaactgaggtaacattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208322312|gb|GE121681.1|GE121681
EST:     GTACAAAAAATGAATATACTGTTCACTTCAGTTTATGGGCCCTTTCCAAG                         GCACCTCTTCTTCTTGGCTGTGATGTTAGAAATATAACTAAAGAGACCATG
genomic: G-ACAAAAAATGAATATACTGTTCACTTCAGTTTATGGGCCCTTTCCAAGgtaatacttt ... tttattgcagGCACCTCTTCTTCTTGGCTGTGATGTTAGAAATATAACTAAAGAGACCATG
EST: gi|208312867|gb|GE111699.1|GE111699
EST:     TGACAAAAAATGAATATACTGTTCACTTCAGTTTATGGGCCCTTTCCAAG                         GCACCTCTTCTTCTTGGCTGTGATGTTAGAAATATAACTAAAGAGACCATG
genomic: TGACAAAAAATGAATATACTGTTCACTTCAGTTTATGGGCCCTTTCCAAGgtaatacttt ... tttattgcagGCACCTCTTCTTCTTGGCTGTGATGTTAGAAATATAACTAAAGAGACCATG
EST: gi|193362616|gb|FK327036.1|FK327036
EST:     TGACAAAAAATGAATATACTGTTCACTTCAGTTTATGGGCCCTTTCCAAG                         GCACCTCTTCTTCTTGGCTGTGATGTTAGAAATATAACTAAAGAGACCATG
genomic: TGACAAAAAATGAATATACTGTTCACTTCAGTTTATGGGCCCTTTCCAAGgtaatacttt ... tttattgcagGCACCTCTTCTTCTTGGCTGTGATGTTAGAAATATAACTAAAGAGACCATG
EST: gi|31458286|gb|CD400314.1|CD400314
EST:     GGGCCCTTTCCAAG                         GCACCTCTTCTTC-TNGCTGTGATGTTAGAAATATAACTAAAGAGACCATG
genomic: GGGCCCTTTCCAAGgtaatacttt ... tttattgcagGCACCTCTTCTTCTTGGCTGTGATGTTAGAAATATAACTAAAGAGACCATG
EST: gi|208328230|gb|GE130060.1|GE130060
EST:     TACTGTTCACTTCAGTTTATGGGCCCTTTCCAAG                         GCACCTCTTCTTCTTGGCTGTGATGTTAGAAATATAACTAAAGAGACCATG
genomic: TACTGTTCACTTCAGTTTATGGGCCCTTTCCAAGgtaatacttt ... tttattgcagGCACCTCTTCTTCTTGGCTGTGATGTTAGAAATATAACTAAAGAGACCATG
EST: gi|193303351|gb|FK272573.1|FK272573
EST:     TGACAAAAAATGAATATACTGTTCACTTCAGTTTATGGGCCCTTTCCAAG                         GCACCTCTTCTTCTTGGCTGTGATGTTAGAAATATAACTAAAGAGACCATG
genomic: TGACAAAAAATGAATATACTGTTCACTTCAGTTTATGGGCCCTTTCCAAGgtaatacttt ... tttattgcagGCACCTCTTCTTCTTGGCTGTGATGTTAGAAATATAACTAAAGAGACCATG