1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ACAATTTGGAGGATATACACTAGTGCGAAATTCAGCTGATCTGTATCGAAGCTTTGGGTTTGATACGCAGCCAGTCCTCATTGGGCTCATCATATTTCAGgtacttttcaaaattatggtctttccatctaaataaaaaaatgtttgcttgatttctattggatgtacatcttgctgcatgggaatgtttctaagttgtg...
species | Glycine max |
transcript | GLYMA09G39150.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GCTTTGGGTTTGATACGCAGCCAGTCCTCATTGGGCTCATCATATTTCAG CATACTGTAATCCCACTTCAGCAATTGGTCAGCTTTGGTCTGAACCTAGTCEST: gi|192302659|gb|FG994897.1|FG994897
genomic: GCTTTGGGTTTGATACGCAGCCAGTCCTCATTGGGCTCATCATATTTCAGgtacttttca ... ttatttgcagCATACTGTAATCCCACTTCAGCAATTGGTCAGCTTTGGTCTGAACCTAGTC
EST: GCTTTGGGTTTGATACGCAGCCAGTCCTCATTGGGCTCATCATATTTCAG CATACTGTAATCCCACTTCAGCAATTGGTCAGCTTTGGTCTGAACCTAGTCEST: gi|5175463|gb|AI759796.1|AI759796
genomic: GCTTTGGGTTTGATACGCAGCCAGTCCTCATTGGGCTCATCATATTTCAGgtacttttca ... ttatttgcagCATACTGTAATCCCACTTCAGCAATTGGTCAGCTTTGGTCTGAACCTAGTC
EST: CTTTGGGGTTTGATACGCAGCCAGTCCTCATTGGGCTCATCATATTTCAG CATACTGTAATCCCACTTCAGCAATTGGTCAGCTTTGGTCTGAACCTAGTCEST: gi|7690863|gb|AW759000.1|AW759000
genomic: CTTTGGG-TTTGATACGCAGCCAGTCCTCATTGGGCTCATCATATTTCAGgtacttttca ... ttatttgcagCATACTGTAATCCCACTTCAGCAATTGGTCAGCTTTGGTCTGAACCTAGTC
EST: GCTTTGGGTTTGATACGCAGCCAGTCCTCATTGGGCTCATCATATTTCAG CATACTGTAATCCCACTTCAGCAATTGGTCAGCTTTGGTCTGAACCTAGTCEST: gi|17519798|gb|BM188840.1|BM188840
genomic: GCTTTGGGTTTGATACGCAGCCAGTCCTCATTGGGCTCATCATATTTCAGgtacttttca ... ttatttgcagCATACTGTAATCCCACTTCAGCAATTGGTCAGCTTTGGTCTGAACCTAGTC
EST: GCTTTGGGTTTGATACGCAGCCAGTCCTCATTGGGCTCATCATATTTCAG CATACTGTAATCCCACTTCAGCAATTGGTCAGCTTTGGTCTGAACCTAGTCEST: gi|19270564|gb|BM886820.1|BM886820
genomic: GCTTTGGGTTTGATACGCAGCCAGTCCTCATTGGGCTCATCATATTTCAGgtacttttca ... ttatttgcagCATACTGTAATCCCACTTCAGCAATTGGTCAGCTTTGGTCTGAACCTAGTC
EST: GCTTTGGGTTTGATACGCAGCCAGTCCTCATTGGGCTCATCATATTTCAG CATACTGTAATCCCACTTCAGCAATTGGTCAGCTTTGGTCTGAACCTAGTCEST: gi|5175455|gb|AI759788.1|AI759788
genomic: GCTTTGGGTTTGATACGCAGCCAGTCCTCATTGGGCTCATCATATTTCAGgtacttttca ... ttatttgcagCATACTGTAATCCCACTTCAGCAATTGGTCAGCTTTGGTCTGAACCTAGTC
EST: GCTTTGGGTTTGATACGCAGCCAGTCCTCATTGGGCTCATCATATTTCAG CATACTGTAATCCCACTTCAGCAATTGGTCAGCTTTGGTCTGAACCTAGTCEST: gi|22933929|gb|BU551068.1|BU551068
genomic: GCTTTGGGTTTGATACGCAGCCAGTCCTCATTGGGCTCATCATATTTCAGgtacttttca ... ttatttgcagCATACTGTAATCCCACTTCAGCAATTGGTCAGCTTTGGTCTGAACCTAGTC
EST: GTCCTCATTGGGCTCATCATATTTCAG CATACTGTAATCCCACTTCAGCAATTGGTCAGCTTTGGTCTGAACCTAGTC
genomic: GTCCTCATTGGGCTCATCATATTTCAGgtacttttca ... ttatttgcagCATACTGTAATCCCACTTCAGCAATTGGTCAGCTTTGGTCTGAACCTAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAATTTGGAGGATATACACTAGTGCGAAATTCAGCTGATCTGTATCGAAGCTTTGGGTTTGATACGCAGCCAGTCCTCATTGGGCTCATCATATTTCAGgtacttttcaaaattatggtctttccatctaaataaaaaaatgtttgcttgatttctattggatgtacatcttgctgcatgggaatgtttctaagttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaaa