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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTACACATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctttgaagattttggctgctgtaaatattgtataaaatgctgggttagtcacctgaattatgtacaagagaatttggtgcagaataaatctta...

Basic information

species Glycine max
transcript GLYMA09G38110.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38110.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 11
ATATTACACATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctttgaagattttggctgctgtaaatattgtataaaatgctgggttagtcacctgaattatgtacaa----gagaatttggtgca-gaataaatctta----------------------------------------------------
|||||||||||||||||||||||||||| || || ||||| || ||||||||||| |||||||||||| || ||||||| |||||   ||||||   | | ||   |   |||   |   | |     |   |  ||     |||  | ||   | |     | | | ||   || ||||  | ||||                                                    
ATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGATATACATTGACAGGCAGCTGCATAACAGACAGgtactttcttttctgttcttttattgagtagcaaagattttcttggtaagagtaactggctgcttcatactccacctcaatattatgacacatgaatgtaacttaatagatcttctatattttttactctacctcaatattttcttgttactttcag

upper sequence: GLYMA09G38110.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G094497_T02 (Zea mays), 5'ss of exon 10
ATATTACACATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctttgaagattttggctgctg------taaatattgtataaaatgctgggttagtcacctgaattatgtacaagagaatttggtgcagaataaatctta-------------------------------------------------------------------------------------------
|||| ||||| ||||||||||| ||||| ||||| |||||||||||||||||||| ||||| |||||| |  ||||||| ||||||   | ||  | | |||    |  ||       |||| ||  |        ||||  ||   |  ||||||| || ||   |||||         ||  | ||                                                                                            
ATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtg--cttttctatgttttctattcttgagttatcaaatgttacactttcacatggggcagct-ctggaattatttataact-aatttaacattttttattttttttctcatattgatatagaatgtgaagtctttgtttatttttactaccttgatagcttatctgtgttgatgtgatggcattatattctttcag

upper sequence: GLYMA09G38110.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G181151_T03 (Zea mays), 5'ss of exon 11
ATATTACACATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggtt-ctttgaagattttggctgctgta---aatattgtataaaatgctgggttagtcacctgaattatgtacaagagaatttggtgcagaataaatctta-------------------------------------------------------------------------------------------
|||| ||||| |||||||| || ||||| ||||| |||||||||||||||||||| ||||| |||||| |  ||||||| ||||||  || |||||    || |   ||   ||   ||| || ||        || |  ||   |  ||||||| || ||   ||||| |       ||  |  |                                                                                            
ATATCACACACCCAACTCCGGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAGgtgcttttctttgtcttttattcttgagttatctaatgttataccttcacatgcggcaggt-ctggaattatttataactaaatttagcatttcttattttctcatatttgatatagaatatgaagtatttgtttattttttactaccttgatagcttatctgtgttgatgtgatcacattttattttatttcag

upper sequence: GLYMA09G38110.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 5'ss of exon 10
ATATTACACATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctttga----agattttggctgctgtaaatattgtataaaatgctgggttagtcacctgaattatgtacaagagaatttggtgcagaataaatctta
||||||| || |||| |||||||||||||||||||||||| || || || || ||| ||||  |||||||  | ||||| |||||  || ||          |||  |  |        | || | |    |  ||   | ||    |    ||||||  |     |||  |  |   |  ||    
ATATTACCCACCCAATTCCTGATCTTACAGGATATATTACGGAAGGTCAAATTTATGTTGATCGGCAGTTACAAAACAGACAGgtatgtgctcaatccctgaattgggtttatcagtggtgttattttgctttgtgatgttgtgtttttttgtatgtattaatcgcttttttttaatgttgat----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10253833|gb|BE821599.1|BE821599
EST:     ATATTACTGAGGGACAGATATATATTGNNAGGCAGTTGTATAANAGGCAG                         ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: gi|27426282|gb|CA937802.1|CA937802
EST:     ATATTACTGAGGGACAGATATATATCGACAGACAGTTGTATAACAGGCAG                         ATATATCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: gi|27426098|gb|CA937618.1|CA937618
EST:     ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAG                         ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: gi|16279376|gb|BI943404.1|BI943404
EST:     ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAG                         ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: gi|20812032|gb|BQ296510.1|BQ296510
EST:     TATATATTGACAGGCAGTTGTATAACAGGCAG                         ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
genomic: TATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: gi|16277795|gb|BI942566.1|BI942566
EST:     ATATTACTGAGGGACAGATATATATCGACAGACAGTTGTATAACAGGCAG                         ATATATCCTCCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: gi|16283538|gb|BI945603.1|BI945603
EST:     ATATTACTGAGGGACAGATATATATTGACAGGCAGATGTATAACAGGCAG                         ATATATCCACCAATCAATGTCCTTGCATCATTGTCTCGTATGATGACG
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: gi|16277730|gb|BI942533.1|BI942533
EST:     ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAG                         ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: gi|9258589|gb|BE346736.1|BE346736
EST:     ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAG                         ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
EST: gi|16284553|gb|BI946150.1|BI946150
EST:     ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAG                         ATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG
genomic: ATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAGgtgggttctt ... ttattggcagATATATCCACCAATCAATGTCCTTCCATCATTGTCTCGTTTGATGAAG