1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TACAAGCATTTGCGGCTGCTGCTGCATCATCTGCTCCTGCAGCATTAGCACAGGTTACTGAAGGTGCGCGCATTCAAGAAGCAGGACATTTGAGATGCAGgtatttttttcccctccttatactctagtaaaagtagctcttttcattacagttgtaccttactacctcatacaaaggtcgtattttctgattatgcaaa...
species | Glycine max |
transcript | GLYMA09G37720.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CAGGTTACTGAAGGTGCGCGCATTCAAGAAGCAGGACATTTGAGATGCAG TGGTGCTGAAATTGGAAGATTCATCACTATGCTACGAAATCCATCATCTATEST: gi|214005584|gb|DB984592.1|DB984592
genomic: CAGGTTACTGAAGGTGCGCGCATTCAAGAAGCAGGACATTTGAGATGCAGgtattttttt ... tgtttctcagTGGTGCTGAAATTGGAAGATTCATCACTATGCTACGAAATCCATCATCTAT
EST: AGGTTACTGAA-GTAACTCGCATTCAAGAAGCAGGACAGAAGAGATGCAG TGGTGCTGAAATTGGAAGATTCATCACTATGCTACGAAATCCATCATCTATEST: gi|208116236|gb|GD920007.1|GD920007
genomic: AGGTTACTGAAGGT-GCGCGCATTCAAGAAGCAGGACATTTGAGATGCAGgtattttttt ... tgtttctcagTGGTGCTGAAATTGGAAGATTCATCACTATGCTACGAAATCCATCATCTAT
EST: CAGGTTACTGAAGGTGCGCGCATTCAAGAAGCAGGACATTTGAGATGCAG TGGTGCTGAAATTGGAAGATTCATCACEST: gi|26058746|gb|CA801660.1|CA801660
genomic: CAGGTTACTGAAGGTGCGCGCATTCAAGAAGCAGGACATTTGAGATGCAGgtattttttt ... tgtttctcagTGGTGCTGAAATTGGAAGATTCATCAC
EST: CAGGTTACTGAAGGTGCGCGCATTCAAGAAGCAGGACATTTGAGATGCAG TGGTGCTGAAATTGGAAGATTCATCACTATGCTACGAAATCCATCATCTATEST: gi|7685215|gb|AW755863.1|AW755863
genomic: CAGGTTACTGAAGGTGCGCGCATTCAAGAAGCAGGACATTTGAGATGCAGgtattttttt ... tgtttctcagTGGTGCTGAAATTGGAAGATTCATCACTATGCTACGAAATCCATCATCTAT
EST: CAGGTTACTGAAGGTGCGCGCATTCAAGAAGCAGGACATTTGAGATGCAG TGGTGCTGAAATTGGAAGATTCATCACTATGCTACGAAATCCATCATCTATEST: gi|18040948|gb|BM309242.1|BM309242
genomic: CAGGTTACTGAAGGTGCGCGCATTCAAGAAGCAGGACATTTGAGATGCAGgtattttttt ... tgtttctcagTGGTGCTGAAATTGGAAGATTCATCACTATGCTACGAAATCCATCATCTAT
EST: CAGGTTACTGAAGGTGCGCGCATTCAAGAAGCAGGACATTTGAGATGCAG TGGTGCTGAAATTGGAAGATTCATCACTATGCTACGAAATCCATCATCTATEST: gi|24136575|gb|BU927085.1|BU927085
genomic: CAGGTTACTGAAGGTGCGCGCATTCAAGAAGCAGGACATTTGAGATGCAGgtattttttt ... tgtttctcagTGGTGCTGAAATTGGAAGATTCATCACTATGCTACGAAATCCATCATCTAT
EST: GTGCGCGCATTCAAGAAGCAGGACATTTGAGATGCAG TGGTGCTGAAATTGGAAGATTCATCACTATGCTACGAAATCCATCATCTATEST: gi|17020708|gb|BM091742.1|BM091742
genomic: GTGCGCGCATTCAAGAAGCAGGACATTTGAGATGCAGgtattttttt ... tgtttctcagTGGTGCTGAAATTGGAAGATTCATCACTATGCTACGAAATCCATCATCTAT
EST: CAGGTTACTGAAGGTGCGCGCATTCAAGAAGCAGGACATTTGAGATGCAG TGGTGCTGAAATTGGAAGATTCATCACTATGCTACGAAATCCATCATCTAT
genomic: CAGGTTACTGAAGGTGCGCGCATTCAAGAAGCAGGACATTTGAGATGCAGgtattttttt ... tgtttctcagTGGTGCTGAAATTGGAAGATTCATCACTATGCTACGAAATCCATCATCTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACAAGCATTTGCGGCTGCTGCTGCATCATCTGCTCCTGCAGCATTAGCACAGGTTACTGAAGGTGCGCGCATTCAAGAAGCAGGACATTTGAGATGCAGgtatttttttcccctccttatactctagtaaaagtagctcttttcattacagttgtaccttactacctcatacaaaggtcgtattttctgattatgcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccctcc