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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTCCTCTGACTACAGAAGATTATGTTCATAGAATTGGGCGTACTGGACGAGCTGGTAAAAAGGGTGTTGCACATACATTCTTTATGCAGCAGAATAAGgtagtataaattctctttatatattctaggttcttctttgcacccatgcatgctgtttctattatacatataattggtgtttttatgtcttttcaccctggttggaatcaacttaagaatggaaattttcag

Basic information

species Glycine max
transcript GLYMA09G34390.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G34390.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os07g20580.1 (Oryza sativa), 5'ss of exon 10
TTTTCCTCTGACTACAGAAGATTATGTTCATAGAATTGGGCGTACTGGACGAGCTGGTAAAAAGGGTGTTGCACATACATTCTTTATGCAGCAGAATAAGgtagtataaattctctttatatattctaggttcttctttgcacccatgcatgctgtttctattatacatataattggtgtttttatgtcttttcaccctggttggaatcaacttaagaatggaaattttcag
 | |||| |||||||||| |||||||| || || |||||| | || || || ||||| || || |||||||||||||| ||||| |  ||  |||| |||||| |  | |||      || |     | |||   | ||      |  | | |   ||   || ||| |||  |       || |   || |  ||                                    
CTATCCTTTGACTACAGAGGATTATGTCCACAGGATTGGGAGGACCGGTCGTGCTGGCAAGAAAGGTGTTGCACATACCTTCTTCACTCAAGAGAACAAGgtattggagatt------atgtgccacacgttagcccttaggtttagccttacaacttaagttgtacttattgtca----cttcaaaactatatacag----------------------------------

upper sequence: GLYMA09G34390.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv02s0109g00380.t01 (Vitis vinifera), 5'ss of exon 13
TTTTCCTCTGACTACAGAAGATTATGTTCATAGAATTGGGCGTACTGGACGAGCTGGTAAAAAGGGTGTTGCACATACATTCTTTATGCAGCAGAATAAGgtagtat-aaattctctttatatattctaggttcttctttgcacccatgcatgctgtttctattatacatataattggtgtttttatgtcttttcaccctggttggaatcaacttaagaatggaaattttcag
||||||||| |||||||| ||||||||||| ||||||||  | ||||||||||||||||| |||||||||||||| |||||||| |||||| | || |||||| ||| | |   |  ||  |  |  ||     |   || ||    || ||   || |   || | ||| ||     |  |||| ||     | |     | |    |||    |                 
TTTTCCTCTCACTACAGAGGATTATGTTCACAGAATTGGAAGAACTGGACGAGCTGGTAAGAAGGGTGTTGCACACACATTCTTCATGCAGGAAAACAAGgtaatattagaaaatgcttgcaggtgttattgcttaaatttcagagttgaata--gtcttggttttgcatttagccaattcttttttga----tgaatagtgataatgtcattgcag----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209729802|gb|BW658607.1|BW658607
EST:     GAGCTGGTAAAAAGGGTGTTGCACATACATTCTTTATGCAGCAGAATAAG                         GGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTA
genomic: GAGCTGGTAAAAAGGGTGTTGCACATACATTCTTTATGCAGCAGAATAAGgtagtataaa ... aaattttcagGGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTA
EST: gi|209710487|gb|BW662023.1|BW662023
EST:     GAGCTGGTAAAAAGGGTGTTGCACATACATTCTTTATGCAGCAGAATAAG                         GGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTA
genomic: GAGCTGGTAAAAAGGGTGTTGCACATACATTCTTTATGCAGCAGAATAAGgtagtataaa ... aaattttcagGGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTA
EST: gi|214009173|gb|DB989889.1|DB989889
EST:     GAGCTGGTAAAAAGGGTGTTGCACATACATTCTTTATGCAACAGAATAAG                         GGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTA
genomic: GAGCTGGTAAAAAGGGTGTTGCACATACATTCTTTATGCAGCAGAATAAGgtagtataaa ... aaattttcagGGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTA
EST: gi|207830340|gb|GD803320.1|GD803320
EST:     GAGCTGGTAAAAAGGGTGTTGCACATACATTCTTTATGCAGCAGAATAAG                         GGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTA
genomic: GAGCTGGTAAAAAGGGTGTTGCACATACATTCTTTATGCAGCAGAATAAGgtagtataaa ... aaattttcagGGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTA
EST: gi|209706566|gb|BW676114.1|BW676114
EST:     GAGCTGGTAAAAAGGGTGTTGCACATACATTCTTTATGCAGCAGAATAAG                         GGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTA
genomic: GAGCTGGTAAAAAGGGTGTTGCACATACATTCTTTATGCAGCAGAATAAGgtagtataaa ... aaattttcagGGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTA
EST: gi|31307413|gb|CD392616.1|CD392616
EST:     GAGCTGGTATAAAGGGTGTTGCACATACATTCTTTATGCAGCAGAATAAG                         GGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTA
genomic: GAGCTGGTAAAAAGGGTGTTGCACATACATTCTTTATGCAGCAGAATAAGgtagtataaa ... aaattttcagGGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTA