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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATAAAAAATCCTAAACTTGTTCCTGGAGGCGGTGCTACAGAGTTGACGGTGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtagttttactgaaccagtagcagtagctgtactacttttgatggattctagttctatctcttgtcgggagtagcagtttacactgaattcttacttaagattgttgttgactgacag

Basic information

species Glycine max
transcript GLYMA09G28650.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G28650.2 (Glycine max), 5'ss of exon 11
lower sequence: Vv17s0000g08170.t01 (Vitis vinifera), 5'ss of exon 10
TATAAAAAATCCTAAACTTGTTCCTGGAGGCGGTGCTACAGAGTTGACGGTGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtagttttactga-accagtagcagtagctgtactacttttgatgga---ttctagttctatctcttgtcgggagtagc--agtttacactgaatt-cttactta--agattgttgttgactgacag------------------------------------------------
 ||||| ||||| || ||||||||||| || |||||||||||||| || || || ||| || | ||||| || ||||||||| |||| ||||| || ||||| |   | | ||   |   |    |   | | | |||  |  ||    | ||   ||  |     |    | || |  | |  |  || ||  |   ||||  ||| |||    | ||  |||  ||||                                                   
GATAAAGAATCCAAAGCTTGTTCCTGGTGGGGGTGCTACAGAGTTAACTGTTTCAGCTACCCTAAAACAGAAAAGTTCATCTGTTGAAGGCATTGAAAAGgtaaattttgcttctttctcatgtatcaaatttgatgtggtttttccatttgaatttttcaagataaatattggttgataatcaccaaggttttatgaaattgtttagttattgcactgcagttttctgatgctttatgcaattttccctatttgtaattttctgctcgtttgtgaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208278764|gb|GE077983.1|GE077983
EST:     TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG                         TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: gi|193547528|gb|FK501465.1|FK501465
EST:     TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG                         TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: gi|192309233|gb|FG999124.1|FG999124
EST:     TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG                         TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: gi|58017480|gb|CX704222.1|CX704222
EST:     TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG                         TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: gi|209714673|gb|BW674236.1|BW674236
EST:     TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG                         TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: gi|193639863|gb|FK592320.1|FK592320
EST:     TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG                         TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: gi|22927071|gb|BU544210.1|BU544210
EST:     TGAGGGCATAGAGAAG                         TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATNNCACGAACTTTG
genomic: TGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: gi|192309232|gb|FG999123.1|FG999123
EST:     TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG                         TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: gi|26048688|gb|CA785141.1|CA785141
EST:     TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG                         TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: gi|193619682|gb|FK572642.1|FK572642
EST:     TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG                         TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: gi|193521393|gb|FK481638.1|FK481638
EST:     TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG                         TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: gi|207803832|gb|GD772791.1|GD772791
EST:     TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG                         TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: gi|193529449|gb|FK487832.1|FK487832
EST:     TGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG                         TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
genomic: TGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: gi|208325439|gb|GE124105.1|GE124105
EST:     TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG                         TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: gi|15199729|gb|BI423980.1|BI423980
EST:     TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG                         TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: gi|208270977|gb|GE067801.1|GE067801
EST:     TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG                         TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCATACCACGAACTTTG
EST: gi|208192695|gb|GD989774.1|GD989774
EST:     TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAG                         TGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCAATACCACGAACTTT
genomic: TGTCGGCTGCCTTGAAACAAAAGAGTTCATCTATTGAGGGCATAGAGAAGgtgagcgtag ... tgactgacagTGGCCTTATGAAGCTGCTGCCCTAGCTTTTGAAGCCA-TACCACGAACTTT