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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTTGCTGCCACACAACCAATCAATTCATTAGCCTTTGTCTTTGATGGTGTGAACTATGGGGCATCTGATTTTGCATATTCTGCATACTCCTTGgtaagttctctcatacaataacttttattaaaaaaaagtattcgtcatctctatcaaatttatttagcaaatttctatgctcataatttgttcag

Basic information

species Glycine max
transcript GLYMA09G15550.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G15550.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os10g13940.1 (Oryza sativa), 5'ss of exon 10
TTTGTTGCTGCCACACAACCAATCAATTCATTAGCCTTTGTCTTTGATGGTGTGAACTATGGGGCATCTGATTTTGCATATTCTGCATACTCCTTGgtaagttctctcatacaataacttttattaaaaaaaagtattcgtcatctctatcaaatttatttagcaaatttctat-gctcataatttgttcag
|||||  ||   || |||||||||||| | ||||| ||||| ||||||||| | || ||||| ||||| ||||||| |||| |||| || ||  ||| ||||   ||  | ||| | || |             |||  ||  | || |||   ||| |||  || |||| | | |     | | |  ||||
TTTGTCTCTCTGACTCAACCAATCAATGCGTTAGCTTTTGTTTTTGATGGTATCAATTATGGAGCATCAGATTTTGGATATGCTGCTTATTCAATGgcaagtcaactagt-caacacctatgtccttc------tatctgtattttcaatcctttttttttcacatatttttgttgaattcattgtcctcag

upper sequence: GLYMA09G15550.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv13s0064g00930.t01 (Vitis vinifera), 5'ss of exon 11
TTTGTTGCTGCCACACAACCAATCAATTCATTAGCCTTTGTCTTTGATGGTGTGAACTATGGGGCATCTGATTTTGCATATTCTGCATACTCCTTGgtaagttctc-tcatacaata-acttttattaaa----aaaaagtattcgtca--tctctatcaaatttatttagcaaatttctatgctcataatttgttcag
||| | || || || |||||||||||||  ||||||||||| || ||||| ||||||| ||| ||||| |||||||||||| ||||||||||| ||| |||| | |  || | || |  ||| ||| ||       ||  || |  | |  |||| ||   | ||   |  ||||||  |            |  ||||
TTTATCGCGGCGACCCAACCAATCAATTGCTTAGCCTTTGTTTTCGATGGAGTGAACTTTGGAGCATCGGATTTTGCATATACTGCATACTCCATGgcaagtgcccaccacagaaaatgcttgtatcaattcttgtaacttaatgtttaattctcaattccagtttgatgacaaattattccttgtgggtgatcctcag

upper sequence: GLYMA09G15550.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv13s0064g00940.t01 (Vitis vinifera), 5'ss of exon 12
TTTGTTGCTGCCACACAACCAATCAATTCATTAGCCTTTGTCTTTGATGGTGTGAACTATGGGGCATCTGATTTTGCATATTCTGCATACTCCTTGgtaagttctctcatacaata-acttttattaaaaaaaagtattcgtcatctctatcaaatttatttagcaaatttctatgctcataatttgttcag-----
||||||||||| || ||||| || ||||| || ||||||||||| || || ||||||| ||| ||||| |||||||||||||||||||||||| ||| ||||    | |  |  |   | |    ||||||    |      ||    ||   |||     || || | || |    |  | | | | |||      
TTTGTTGCTGCAACTCAACCGATAAATTCTTTGGCCTTTGTCTTCGACGGCGTGAACTTTGGAGCATCGGATTTTGCATATTCTGCATACTCCATGgcaagtctattaaccccttgtgcatgccataaaaatgcctgacatgcaagaatagggaatgagaataacagaatt-tggattacttactagatcaaatgaa

upper sequence: GLYMA09G15550.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S88_225V6.1 (Physcomitrella patens), 5'ss of exon 11
TTTGTTGCTGCCACACAACCAATCAATTCATTAGCCTTTGTCTTTGATGGTGTGAACTATGGGGCATCTGATTTTGCATATTCTGCATACTCCTTGgtaagttctctcatacaataacttttattaaaaaaaagtattcgtca-tctctatcaaatttattta-gcaaatttctatgc----tcataatttgttcag
||||| |||   || ||||||||||| |||||||| ||||||||||||||  |  | ||||| || || || ||| | ||| |||| |||||  |||||||  ||  | |   |       | ||  | |   || ||| | | | | |  ||   | ||| | |  || |||||        ||| |   ||  | 
TTTGTGGCTCTAACTCAACCAATCAACTCATTAGCATTTGTCTTTGATGGCATTCATTATGGAGCGTCAGACTTTCCTTATGCTGCTTACTCAATGgtaagggcttccgtttcaagtaggctgttgtacacttgtcttcatgaatgttttgcatgataattcacgtcaacttctaaagaaaaccatgaagcgtaaa-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298168058|gb|HO013321.1|HO013321
EST:     ATGGTGTGAACTATGGGGCATCTGATTTTGTATATTCTGCATACTCCTTG                         GTCACCGTGTCATTGGCAAGTGTTGCTTCATTGTTTCTTCTCTCTA
genomic: ATGGTGTGAACTATGGGGCATCTGATTTTGCATATTCTGCATACTCCTTGgtaagttctc ... atttgttcagGTCACCGTGTCATTGGCAAGTGTTGCTTCATTGTTTCTTCTCTCTA