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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCTAGAAGAAGCAATTGCCTTGAACAATTCTGTACCTCAAGGATTAAGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGGgtaagtactcacaaacttatttttgtcctatcctttggatctctgctaatgagtttggcctacacacttcagtacttgactaacaatcctataagatgtttgtggtgatttatagttgcacaaatagtatattttacttgttcatgggtgtaaatatggtgcgcag

Basic information

species Glycine max
transcript GLYMA09G08150.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G08150.2 (Glycine max), 5'ss of exon 11
lower sequence: Vv11s0016g00900.t01 (Vitis vinifera), 5'ss of exon 12
ACTCTAGAAGAAGCAATTGCCTTGAACAATTCTGTACCTCAAGGATTAAGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGGgtaagtactcacaaacttatttttgtcctatcctttggatctctgctaatgagtttggcct----acacacttcagtacttgactaacaatcctataagatgtttgtggtgatttatagttgcacaaatagtatattttacttgttcatgggtgtaaatatggtgcgcag
||| | ||||||||| |||   ||||||| |||||||| |||||||| |||||||||||||| || |  | ||||| |  ||| ||||||||||| |||| ||||||    |  || | ||           ||||   | |   | |   |||    |    | | |    | | | |||   |  ||  ||| |||                                                                      
ACTTTTGAAGAAGCAGTTGAAATGAACAACTCTGTACCACAAGGATTGAGTAGTTCAATCTTCACTCGCAAACCTGAAGTTATCTTCAAATGGATTGGgtgagtact-gtgagattgtattaagatggcttgttggccatttatgatttgttttattattttgataaaacataatgcatgaagtatcatattatcagac---------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58019812|gb|CX706554.1|CX706554
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGGgtaagtactc ... tggtgcgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|57575444|gb|CX548419.1|CX548419
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGGgtaagtactc ... tggtgcgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|207747420|gb|GD719873.1|GD719873
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGGgtaagtactc ... tggtgcgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|209713773|gb|BW681886.1|BW681886
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGGgtaagtactc ... tggtgcgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|7590000|gb|AW705762.1|AW705762
EST:     TAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: TAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGGgtaagtactc ... tggtgcgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|254336948|gb|GR843127.1|GR843127
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGGgtaagtactc ... tggtgcgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|208261117|gb|GE060363.1|GE060363
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGG                         GCCACGAGGTAGTGATTGT
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGGgtaagtactc ... tggtgcgcagGCCACGAGGTAGTGATTGT
EST: gi|58022816|gb|CX709557.1|CX709557
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGGgtaagtactc ... tggtgcgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|208163845|gb|GD961511.1|GD961511
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCT
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGGgtaagtactc ... tggtgcgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCT
EST: gi|254336949|gb|GR843128.1|GR843128
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGGgtaagtactc ... tggtgcgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|193475794|gb|FK442519.1|FK442519
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGGgtaagtactc ... tggtgcgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|213598271|gb|DB979891.1|DB979891
EST:     CTATATTCAAATGGATCGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: CTATATTCAAATGGATCGGgtaagtactc ... tggtgcgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
EST: gi|58022682|gb|CX709423.1|CX709423
EST:     AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGG                         GCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG
genomic: AGTAGTTCAATCTTTACCCAAAGACCTGGAACTATATTCAAATGGATCGGgtaagtactc ... tggtgcgcagGCCACGAGGTAGTGATTGTGGTATAGTGAATGCAAACATACCTACAAATGG