Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGAACTCAGCAAGCAGTGTGACAGTCTTCCAAGAGGCGAGTTTGCCTCTAAAGCTCTGAGCCATAGTTTTTTTGTGTATGCGTGTGATATGCTTGAGgtcagtcctgttatctatgtttctttcttgacctactaaatgtagagcgaccagatcaggattaaggtagagagagaacaatttctttggaataactaga...

Basic information

species Glycine max
transcript GLYMA09G02960.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G02960.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv18s0166g00300.t01 (Vitis vinifera), 5'ss of exon 13
GGAGGAACTCAGCAAGCAGTGTGACAGTCTTCCAAGAGGCGAGTTTGCCTCTAAAGCTCTGAGCCATAGTTTTTTTGTGTATGCGTGTGATATGCTTGAGgtcagtcctgttatctatgttt----ct--ttcttgacctactaaatgtagagcgaccagatcaggattaaggtagagagagaacaatttctttggaataactaga
||||||| |||||||||||||  | || ||||||||||| |||||||| || |||||| ||||||| |||||   ||||| |||  |  ||||| ||||||| |||  | ||||   || ||    ||  ||||| |  |  | ||| |           ||    ||| || | |   |  ||  | |  || |    |      
GGAGGAAATCAGCAAGCAGTGCCAAAGCCTTCCAAGAGGAGAGTTTGCTTCAAAAGCTTTGAGCCACAGTTTCACTGTGTTTGCTCGCAATATGGTTGAGgttagtggtcttattcttgattggggctgattcttaattttttgaatttg--ttttttgtatgcatatttagattgtttggaaaatagtgattggatgcaga----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23056573|gb|BU577749.1|BU577749
EST:     CTAAAGCTCTGAGCCATAGNNNNNNNGTGTATGCGTGTGATATGCTTGAG                         GCTATCAATTTCTCAAACTTATATGCACCTGAACATCTAATTATCAACGTG
genomic: CTAAAGCTCTGAGCCATAGTTTTTTTGTGTATGCGTGTGATATGCTTGAGgtcagtcctg ... catctttcagGCTATCAATTTCTCAAACTTATATGCACCTGAACATCTAATTATCAACGTG