1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTTGCTGCTAACCAACATAAGCCAGCTGATATCGTCGGTATATTTGTTGCGAACAAAAGTAAGATGCTGAGACTGTTGGAAGACTTCAAAATTGACAAAGgtaagtgatgtcatctcttgatagtttagttgcttttatagtatcaattatcagtttctgatgatcagcttttaatgtgttgtgattgtgcag
species | Glycine max |
transcript | GLYMA09G01370.4 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GAACAAAAGTAAGATGCTGAGACTGTTGGAAGACTTCAAAATTGACAAAG AGGATGAACAATTTGAAGCTGACAAAGCTCAAGTGATGAGGGAAATTGAAGEST: gi|254315383|gb|GR825192.1|GR825192
genomic: GAACAAAAGTAAGATGCTGAGACTGTTGGAAGACTTCAAAATTGACAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCTGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: GAACAAAAGTAAGATGCTGAGACTGTTGGAAGACTTCAAAATTGACAAAG AGGATGAACAATTTGAAGCTGACAAAGCTCAAGTGATGAGGGAAATTGAAGEST: gi|120532773|gb|EH260906.1|EH260906
genomic: GAACAAAAGTAAGATGCTGAGACTGTTGGAAGACTTCAAAATTGACAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCTGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: GAACAAAAGTAAGATGCTGAGACTGTTGGAAGACTTCAAAATTGACAAAG AGGATGAACAATTTGAAGCTGACAAAGCTCAAGTGATGAGGGAAATTGAAGEST: gi|254314657|gb|GR829650.1|GR829650
genomic: GAACAAAAGTAAGATGCTGAGACTGTTGGAAGACTTCAAAATTGACAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCTGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: GAACAAAAGTAAGATGCTGAGACTGTTGGAAGACTTCAAAATTGACAAAG AGGATGAACAATTTGAAGCTGACAAAGCTCAAGTGATGAGGGAAATTGAAGEST: gi|15662122|gb|BI699493.1|BI699493
genomic: GAACAAAAGTAAGATGCTGAGACTGTTGGAAGACTTCAAAATTGACAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCTGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: GAACAAAAGTAAGATGCTGAGACTGTTGGAAGACTTCAAAATTGACAAAG AGGATGAACAATTTGAAGCTGACAAAGCTCAAGTGATGAGGGAAATTGAAGEST: gi|120533916|gb|EH262049.1|EH262049
genomic: GAACAAAAGTAAGATGCTGAGACTGTTGGAAGACTTCAAAATTGACAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCTGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: GAACAAAAGTAAGATGCTGAGACTGTTGGAAGACTTCAAAATTGACAAAG AGGATGAACAATTTGAAGCTGACAAAGCTCAAGTGATGAGGGAAATTGAAGEST: gi|254314384|gb|GR831969.1|GR831969
genomic: GAACAAAAGTAAGATGCTGAGACTGTTGGAAGACTTCAAAATTGACAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCTGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: GAACAAAAGTAAGATGCTGAGACTGTTGGAAGACTTCAAAATTGACAAAG AGGATGAACAATTTGAAGCTGACAAAGCTCAAGTGATGAGGGAAATTGAAGEST: gi|42722916|gb|CK768815.1|CK768815
genomic: GAACAAAAGTAAGATGCTGAGACTGTTGGAAGACTTCAAAATTGACAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCTGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: GAACAAAAGTAAGATGCTGAGACTGTTGGAAGACTTCAAAATTGACAAAG AGGATGAACAATTTGAAGCTGACAAAGCTCAAGTGATGAGGGAAATTGAAGEST: gi|9899741|gb|BE608709.1|BE608709
genomic: GAACAAAAGTAAGATGCTGAGACTGTTGGAAGACTTCAAAATTGACAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCTGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: GAACAAAAGTAAGATGCTGAGACTGTTGGAAGACTTCAAAATTGACAAAG AGGATGAACAATTTGAAGCTGACAAAGCTCAAGTGATGAGGGAAATTGAAGEST: gi|207840525|gb|GD812230.1|GD812230
genomic: GAACAAAAGTAAGATGCTGAGACTGTTGGAAGACTTCAAAATTGACAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCTGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: CTGTTGGAAGACTTCAAAATTGACAAAG AGGATGAACAATTTGAAGCTGACAAAGCTCAAGTGATGAGGGAAATTGAAGEST: gi|17963457|gb|BM270206.1|BM270206
genomic: CTGTTGGAAGACTTCAAAATTGACAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCTGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: GAACAAAAGTAAGATGCTGAGACTGTTGGAAGACTTCAAAATTGACAAAG AGGATGAACAATTTGAAGCTGACAAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GAACAAAAGTAAGATGCTGAGACTGTTGGAAGACTTCAAAATTGACAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCTGACAAAGCTCAAGTGATGAGGGAAATTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGCTGCTAACCAACATAAGCCAGCTGATATCGTCGGTATATTTGTTGCGAACAAAAGTAAGATGCTGAGACTGTTGGAAGACTTCAAAATTGACAAAGgtaagtgatgtcatctcttgatagtttagttgcttttatagtatcaattatcagtttctgatgatcagcttttaatgtgttgtgattgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA