1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TTATTTGTACAAGCTGGCATATTCAGAATGGAGAGTACTTGTGGTACCTGCAAAGGAACTGGAAAAATTGTATCGgtatggtataactatccccttcttttacatttgtactattaaatctcttatttttagtatattgcccaatggttcagaaaatatgatggatggagtcact...
species | Glycine max |
transcript | GLYMA09G00580.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GAATGGAGAGTACTTGTGGTACCTGCAAAGGAACTGGAAAAATTGTATCG GATTACTGCAAGTCTTGCAGGG-TGCAAAGATTGTCAAAGGAATGAAGTCGEST: gi|7924054|gb|AW830062.1|AW830062
genomic: GAATGGAGAGTACTTGTGGTACCTGCAAAGGAACTGGAAAAATTGTATCGgtatggtata ... ttggtatcagGATTACTGCAAGTCTTGCAGGGGTGCAAAGATTGTCAAAGGAATGAAGTCG
EST: GAATGGAGAGTACTTGTGGTACCTGCAAAGGAACTGGAAAAATTGTATCG GATTACTGCAAGTCTTGCAGGGGTGCGAAGATTGTCAAAGGAATGAAGTCGEST: gi|7796591|gb|AW781988.1|AW781988
genomic: GAATGGAGAGTACTTGTGGTACCTGCAAAGGAACTGGAAAAATTGTATCGgtatggtata ... ttggtatcagGATTACTGCAAGTCTTGCAGGGGTGCAAAGATTGTCAAAGGAATGAAGTCG
EST: GAATGGAGAGTACTTGTGGTACCTGCAAAGGAACTGGAAAAATTGTATCG GATTACTGCAAGTCTTGCAGGGGTGCAAAGATTGTCAAAGGAATGAAGTCG
genomic: GAATGGAGAGTACTTGTGGTACCTGCAAAGGAACTGGAAAAATTGTATCGgtatggtata ... ttggtatcagGATTACTGCAAGTCTTGCAGGGGTGCAAAGATTGTCAAAGGAATGAAGTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATTTGTACAAGCTGGCATATTCAGAATGGAGAGTACTTGTGGTACCTGCAAAGGAACTGGAAAAATTGTATCGgtatggtataactatccccttcttttacatttgtactattaaatctcttatttttagtatattgcccaatggttcagaaaatatgatggatggagtcact
- - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccttc