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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGAAATGCTAAAGAAGCTTGGTGACCTTTTGAATGAGAGTCATTATAGCTGTAGTGTTCTATACGAATGCAGgtattaataccaaatactgggttttagaattctgtcttctgtttataaagaacatgcaattttattgtgtgtttgacagtgtctagtggttgtatatttagtgcttgatttgtgttatatgatctctttcaatcttcaaatcactaatattgcgtgtacaatgtcattttttttttctttttactttgaatcag

Basic information

species Glycine max
transcript GLYMA08G47350.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G47350.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G458549_T01 (Zea mays), 5'ss of exon 11
TGAGGAA---ATGCTAAAGAAGCTTGGTGACCTTTTGAATGAGAGTCATTATAGCTGTAGTGTTCTATACGAATGCAGgtattaataccaaatactg---ggttttagaattctgtcttctgtttataaagaacatgcaattttattgtgtgtttgacagtgtctagtggttgtatatttagtgcttgatttgtgttatatgatctctttcaatcttcaaatcactaatattgcgtgtacaatgtcattttttttttctttttactttgaatcag
|||||||   | ||| ||||| |||||||| ||| |||| ||||| ||||| ||||| || || |||||||||||||||||    | |    |||||    | ||  ||| |  |  | ||||     ||  | |||    ||||       |  ||      ||   |    |||||||     |  |   |                                                                                  
TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTACAGCTGCAGCGTGCTATACGAATGCAGgtacctttgcagtgtactgttcagcttctgaaattagcgtgctgt-----aaacagatgttgctttacaaaacttaggaacaca-ctgacg--catatatttcactatataccag----------------------------------------------------------------------------------

upper sequence: GLYMA08G47350.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv05s0077g00690.t01 (Vitis vinifera), 5'ss of exon 11
---TGAGGAAATGCTAAAGAAGCTTGGTGACCTTTTGAATGAGAGTCATTATAGCTGTAGTGTTCTATACGAATGCAGgtattaataccaaatactgggttttagaattctgtcttctgtttataaagaacatgcaattttattgtgtgtttgacagtgtctagtggttgtatatttagtgcttgatttgtgttatatgatctctttcaatcttcaaatcactaatattgcgtgtacaatgtcattttttttttctttttactttgaatcag
    || || |||||||||||||| ||||||||| ||||  |||| ||  | ||||| |||||| ||||||| ||||||||        |||| |     |   |||| |       ||    |||  ||||  ||| |||      || || | | ||     |  || | |  |||| || | | |      ||| || ||                                                                     
TGAGGAAGACATGCTAAAGAAGCTCGGTGACCTTATGAACAAGAGCCACGACAGCTGCAGTGTTTTATACGAGTGCAGgta--------aaattcaatcctcctgaatgcaacaacttg---gtaaccaaca--caacttt------tgctt-atactgctagctctttttgtccttagagcctaagt------ataggaactt--------------------------------------------------------------------