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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTGTATACACTGGTGTTGATTTTTGTAAAAGGTTGTGTGGTGTCTCTGTTATCAGAAGgtattagtctagtccaaagctggagttggttgggcatttgatggaatattttcatccttgcctcaaagaattgactaaaatgtttttcttaatcaatcac...

Basic information

species Glycine max
transcript GLYMA08G45270.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G45270.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G034143_T03 (Zea mays), 5'ss of exon 12
GTTCTGTATACACTGGTGTTGATTTTTGTAAAAGGTTGTGTGGTGTCTCTGTTATCAGAAGgtattagtctagtccaaagctggagttggttgggcatttgatggaatattttc---atccttgcctcaaagaattgactaaaatgtttttcttaatcaatcac
| ||||| ||||||||||| || || |  |||||||||||||||||||| || ||||| |||||  |   |   | |||       ||  |||     ||| |    |  |  |    |   || || |   | |     |||| |            |   | 
GATCTGTTTACACTGGTGTGGAGTTCTCCAAAAGGTTGTGTGGTGTCTCAGTGATCAGGAGgtaccaacttttcctaaacaatatattctttgtatgcttgtttaggttctaaccgagttaatgacttaggcactca--caaaaggaggaaaaaggctatgta-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31311442|gb|CD396645.1|CD396645
EST:     TGTGGTGTCTCTGTTATCAGAAG                         TGGGGAGAGTATGGAGAATGCTTTGAGAGCATGCTGTAAAGGTATAAAGAT
genomic: TGTGGTGTCTCTGTTATCAGAAGgtattagtct ... ctcatttcagTGGGGAGAGTATGGAGAATGCTTTGAGAGCATGCTGTAAAGGTATAAAGAT
EST: gi|13240468|gb|BG359777.1|BG359777
EST:     ACTGGTGTTGATTTTTGTAAAAGGTTGTGTGGTGTCTCTGTTATCAGAAG                         TGGGGAGAGTATGGAGAATGCTTTGAGAGCATGCTGTAAAGGTATAAAGAT
genomic: ACTGGTGTTGATTTTTGTAAAAGGTTGTGTGGTGTCTCTGTTATCAGAAGgtattagtct ... ctcatttcagTGGGGAGAGTATGGAGAATGCTTTGAGAGCATGCTGTAAAGGTATAAAGAT