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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttatcctctcgagtcttgtttatattgaacaatgaattatatatagttttccctgtctgatgcctctagaacattggaaactttattttcatct...

Basic information

species Glycine max
transcript GLYMA08G32090.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193491837|gb|FK456473.1|FK456473
EST:     TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT                         CTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
EST: gi|254335594|gb|GR847122.1|GR847122
EST:     TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT                         CTCGAAGCAATG
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATG
EST: gi|22927236|gb|BU544375.1|BU544375
EST:     TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT                         CTCGAAGCAATGGGTTTTGATCGTGCAACTGTANNNGAGGTGTACTTTGCT
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
EST: gi|120494681|gb|EH222848.1|EH222848
EST:     TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT                         CTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
EST: gi|208159114|gb|GD955199.1|GD955199
EST:     TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT                         CTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
EST: gi|22929333|gb|BU546472.1|BU546472
EST:     TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT                         CTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
EST: gi|192313582|gb|FK004164.1|FK004164
EST:     TGCCGCAAGCAGTGACTGTCACCCCTGAG-AGCGGCAAGCAATTGAGCGT                         CTCGAAGCAATGGGTTT-GATCGTGCA-CTGTATTGGAG-TGTACTTTGCT
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
EST: gi|208222091|gb|GE020389.1|GE020389
EST:     TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT                         CTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTNTACTTTGCT
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
EST: gi|6341921|gb|AW164745.1|AW164745
EST:     TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT                         CTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
EST: gi|51336342|gb|CO980208.1|CO980208
EST:     TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT                         CTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
EST: gi|208171261|gb|GD973170.1|GD973170
EST:     TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT                         CTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
EST: gi|254335595|gb|GR847123.1|GR847123
EST:     TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT                         CTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
EST: gi|7692091|gb|AW760206.1|AW760206
EST:     TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT                         CTCGAAGCAATGGGTTTTGATCGCGCAACTGTATTGGAGGTGTACTTTGCT
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
EST: gi|193539115|gb|FK496433.1|FK496433
EST:     TGCCGCAAGCGGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT                         CTCGAAGCAATGGGTTTTGATCGTGCAACTGTATT
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATT
EST: gi|120494767|gb|EH222934.1|EH222934
EST:     TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGT                         CTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT
genomic: TGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttat ... tttgctccagCTCGAAGCAATGGGTTTTGATCGTGCAACTGTATTGGAGGTGTACTTTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAATATACTGGGACAGCTGGCTGGTGCCATGCCGCAAGCAGTGACTGTCACCCCTGAGGAGCGGCAAGCAATTGAGCGTgtaagtttatcctctcgagtcttgtttatattgaacaatgaattatatatagttttccctgtctgatgcctctagaacattggaaactttattttcatct

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA