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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCTCAGATACACCATCACTGTCTGTGGAGAGAATGAGGGAAGCTCAAGCTCGTTTGCAGACACCCTATCTTGTTCTTAGTGGTCATGTTAAACCAGGgtatgattttaacaattcctgaagttttaatttaaaaactgtttacatattgtagaagtgtctactggaattgtgtgtagttcagcgcacacacacacac...

Basic information

species Glycine max
transcript GLYMA08G24660.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G24660.1 (Glycine max), 5'ss of exon 11
lower sequence: AT5G16780.1 (Arabidopsis thaliana), 5'ss of exon 11
AGAGCTCAGATACACCATCACTGTCTGTGGAGAGAATGAGGGAAGCTCAAGCTCGTTTGCAGACACCCTATCTTGTTCTTAGTGGTCATGTTAAACCAGGgtatgattttaacaattcctgaagttttaattta-aaaactgtttacatattgtagaagt---gtctactggaattgtgtgtagttcagcgcacacacacacac
| | |||||| |||||||| | ||||||  | |||||||| |||||||||||||  ||| | || || || ||||| || ||||| ||||| ||||||||||||   | |      |  |  ||||||| |||    ||    | | |||     || |    || |  |  | |      || ||     ||   |  ||   
AAAACTCAGACACACCATCGCAGTCTGTTCAAAGAATGAGAGAAGCTCAAGCTCAATTGAAAACTCCTTACCTTGTCCTCAGTGGCCATGTCAAACCAGGgtatacatatgcttcattattcagttttagtttttggaatcactgagatacaagtgacgctcagtttctttaactaacacata-tttgttacat-tattcag--

upper sequence: GLYMA08G24660.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv11s0078g00440.t01 (Vitis vinifera), 5'ss of exon 11
AGAGCTCAGATACACCATCACTGTCTGTGGAGAGAATGAGGGAAGCTCAAGCTCGTTTGCAGACACCCTATCTTGTTCTTAGTGGTCATGTTAAACCAGGgtatgattttaacaattcctgaagttttaattta--aaaactgtttacatattgtagaagtgtctactggaattgtgtgtagttcagcgcacacacacacac-
|||  ||||| || ||||||| |||||| ||| | |||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||   ||  | | | | || | |||   | |  | ||||    |  |  ||||| |   || || ||  |  ||   ||   | |      |   
AGAATTCAGACACCCCATCACAGTCTGTTGAGCGGATGAGGGAAGCTCAAGCTCGGTTGAAGACACCCTATCTTGTTCTTAGTGGGCATGTTAAACCAGGgtatgctttttg-aacccttcatgcttcatttttttatatttatttatgattcatcaaagtggca--tgaaagtggttcgagagaaggaaaaaagttttctgg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151410856|gb|EV280671.1|EV280671
EST:     GCTCGTTTGCAGACACCCTATCTTGTTCTTAGTGGTCATGTTAAACCAGG                         ACAAACTAGTGACCCAAAAAGTGGTTTTGCAACTGTTGAGAAGGATCTTCC
genomic: GCTCGTTTGCAGACACCCTATCTTGTTCTTAGTGGTCATGTTAAACCAGGgtatgatttt ... ctattggcagACAAACTAGTGACCCAAAAAGTGGTTTTGCAACTGTTGAGAAGGATCTTCC
EST: gi|298174867|gb|HO014784.1|HO014784
EST:     GCTCGTTTGCAGACACCCTATCTTGTTCTTAGTGGTCATGTTAAACCAGG                         ACAAACTAGTGACCCAAAAAGTGGTTTTGCAACTGTTGAGAAGGATCTTCC
genomic: GCTCGTTTGCAGACACCCTATCTTGTTCTTAGTGGTCATGTTAAACCAGGgtatgatttt ... ctattggcagACAAACTAGTGACCCAAAAAGTGGTTTTGCAACTGTTGAGAAGGATCTTCC
EST: gi|192296695|gb|FG991263.1|FG991263
EST:     GCTCGTTTGCAGACACCCTATCTTGTTCTTAGTGGTCATGTTAAACCAGG                         ACAAACTAGTGACCCAAAAAGTGGTTTTGCAACTGTTGAGAAG-ATCTTCC
genomic: GCTCGTTTGCAGACACCCTATCTTGTTCTTAGTGGTCATGTTAAACCAGGgtatgatttt ... ctattggcagACAAACTAGTGACCCAAAAAGTGGTTTTGCAACTGTTGAGAAGGATCTTCC
EST: gi|16348613|gb|BI974208.1|BI974208
EST:     GCTCGTTTGCAGACACCCTATCTTGTTCTTAGTGGTCATGTTAAACCAGG                         ACAAACTAGTGACCCAAAAAGTGGTTTTGCAACTGTTGAGAAGGATCTTCC
genomic: GCTCGTTTGCAGACACCCTATCTTGTTCTTAGTGGTCATGTTAAACCAGGgtatgatttt ... ctattggcagACAAACTAGTGACCCAAAAAGTGGTTTTGCAACTGTTGAGAAGGATCTTCC