Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCCAATTCTGATGCCGTTGTTTATGTCGGCTGTGGGGAACGTGGAAATGAAATGGCAGAGgtatgctttcctttcatttgcaaatattgtgtttctaattttagagttggtcaaactaattcaatgattgttcag

Basic information

species Glycine max
transcript GLYMA08G23990.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G23990.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S8_312V6.1 (Physcomitrella patens), 5'ss of exon 11
TATTCCAATTCTGATGCCGTTGTTTATGTCGGCTGTGGGGAACGTGGAAATGAAATGGCAGAGgtatgctttcctttc----atttgcaaatattgtgt-ttctaattttagagttggtcaaactaat----tcaatgattgttcag-------------------------------------------------------------------------------------------------
|||||||| ||| |||| ||||| ||||| |||||||| || ||||| ||||||||||| ||||| || | |    |     |||| |    |   ||  ||  ||||||| |         | |  |    | ||   |||| ||                                                                                                  
TATTCCAACTCTAATGCTGTTGTCTATGTTGGCTGTGGAGAGCGTGGGAATGAAATGGCTGAGgtgtggtcttgcctggacaattttcttgaagcatgggtttcaattttataacaatgtgtattgctgttgttaaaacttgtgcattatcaagttgtcttgctacatcatatttttgagtgtggtaatacgataatatttcatgccatggtatgtagttaactgttggagctgtggtgtgtag

upper sequence: GLYMA08G23990.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S44_102V6.1 (Physcomitrella patens), 5'ss of exon 11
TATTCCAATTCTGATGCCGTTGTTTATGTCGGCTGTGGGGAACGTGGAAATGAAATGGCAGAGgt------atgctttcct------ttcatttgcaaatattgtgtttctaattttaga-gttggtcaaactaattcaatgattgttcag--------------------------------------------------------------------------------
|| ||||| ||  |||| |||||||| ||||||||||| || ||||||||||||||||| |||||      |||    | |       |   | | ||  |   ||||  |  ||   || |||    || || | |||  |||| |||                                                                                  
TACTCCAACTCCAATGCAGTTGTTTACGTCGGCTGTGGAGAGCGTGGAAATGAAATGGCTGAGgtttcgtaatgtgaccataacttccttgctcgtaatcaaattgttcatctttgcggatgtttacgaatctgactcagggattcttcctattgcagtggggtatctcatgaactcaaagtttgcttctccaaatttatgtaaccaatttgtttggcttgtggtgtgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19935049|gb|BQ080079.1|BQ080079
EST:     ATGCCGTTGTTTATGTCGGCTGTGGGGAACGTGGAAATGAAATGGCAGAG                         GTTCTAATGGACTTTCCCCAACTTACAATGACATTACCTGATGGTCGTGAA
genomic: ATGCCGTTGTTTATGTCGGCTGTGGGGAACGTGGAAATGAAATGGCAGAGgtatgctttc ... gattgttcagGTTCTAATGGACTTTCCCCAACTTACAATGACATTACCTGATGGTCGTGAA
EST: gi|16278104|gb|BI942728.1|BI942728
EST:     ATGCCGTTGTTTATGTCGGCTGTGGGGAACGTGGAAATGAAATGGCAGAG                         GTTCTAATGGACTTTCCCCAACTTACAATGACATTACCTGATGGTCGTGAA
genomic: ATGCCGTTGTTTATGTCGGCTGTGGGGAACGTGGAAATGAAATGGCAGAGgtatgctttc ... gattgttcagGTTCTAATGGACTTTCCCCAACTTACAATGACATTACCTGATGGTCGTGAA
EST: gi|151402942|gb|EV272755.1|EV272755
EST:     ATGCCGTTGTTTATGTCGGCTGTGGGGAACGTGGAAATGAAATGGCAGAG                         GTTCTAATGGACTTTCCCCAACTCACAATGACATTACCTGATGGTCGTGAA
genomic: ATGCCGTTGTTTATGTCGGCTGTGGGGAACGTGGAAATGAAATGGCAGAGgtatgctttc ... gattgttcagGTTCTAATGGACTTTCCCCAACTTACAATGACATTACCTGATGGTCGTGAA
EST: gi|18692695|gb|BM521543.1|BM521543
EST:     ATGCCGTTGTTTATGTCGGCTGTGGGGAACGTGGAAATGAAATGGCAGAG                         GTTCTAATGGACTTTCCCCAACTTACAATGACATTACCTGATGGTCGTGAA
genomic: ATGCCGTTGTTTATGTCGGCTGTGGGGAACGTGGAAATGAAATGGCAGAGgtatgctttc ... gattgttcagGTTCTAATGGACTTTCCCCAACTTACAATGACATTACCTGATGGTCGTGAA
EST: gi|21889244|gb|BQ742457.1|BQ742457
EST:     ATGCCGTTGTTTATGTCGGCTGTGGGGAACGTGGAAATGAAATGGCAGAG                         GTTCTAATGGACTTTCCCCAACTTACAATGACATTACCTGATGGTCGTGAA
genomic: ATGCCGTTGTTTATGTCGGCTGTGGGGAACGTGGAAATGAAATGGCAGAGgtatgctttc ... gattgttcagGTTCTAATGGACTTTCCCCAACTTACAATGACATTACCTGATGGTCGTGAA