1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GGATGAACTAGCATGCTTTGCTCCAGGGATGATTGCTTTGGGATCATTTGGTTACAGTGCTGCTGATGATTCACAGAAGTTTCTGTCACTTGCAGAAGAGgtatattttgatagcctatttaatttaataaacccttctatgtgcttgttctgttgactgactgagttttggtcttgatctgtcaatttacacaaggttt...
species | Glycine max |
transcript | GLYMA08G23730.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GCTGCTGATGATTCACAGAAGTTTCTGTCACTTGCAGAAGAG CTTGCTTGGACATGTTATAACTTCTACCAATCAACTCCAACAAAATTGGCTEST: gi|27445891|gb|CA953014.1|CA953014
genomic: GCTGCTGATGATTCACAGAAGTTTCTGTCACTTGCAGAAGAGgtatattttg ... tactttgcagCTTGCTTGGACATGTTATAACTTCTACCAATCAACTCCAACAAAATTGGCT
EST: GTTACAGTGCTGCTGATGATTCACAGAAGTTTCTGTCACTTGCAGAAGAG CTTGCTTGGACATGTTATAACTTCTACCAATCAACTCCAACAAAATTGGCTEST: gi|192311620|gb|FK003103.1|FK003103
genomic: GTTACAGTGCTGCTGATGATTCACAGAAGTTTCTGTCACTTGCAGAAGAGgtatattttg ... tactttgcagCTTGCTTGGACATGTTATAACTTCTACCAATCAACTCCAACAAAATTGGCT
EST: GCTGCTGATGATTCACAGAAGTTTCTGTCACTTGCAGAAGAG CTTGCTTGGACATGTTATAACTTCTACCAATCAACTCCAACAAAATTGGCT
genomic: GCTGCTGATGATTCACAGAAGTTTCTGTCACTTGCAGAAGAGgtatattttg ... tactttgcagCTTGCTTGGACATGTTATAACTTCTACCAATCAACTCCAACAAAATTGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATGAACTAGCATGCTTTGCTCCAGGGATGATTGCTTTGGGATCATTTGGTTACAGTGCTGCTGATGATTCACAGAAGTTTCTGTCACTTGCAGAAGAGgtatattttgatagcctatttaatttaataaacccttctatgtgcttgttctgttgactgactgagttttggtcttgatctgtcaatttacacaaggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT