Sequence
atgc intronic sequence ATGC exonic sequenceAAGAACTCGCACGAATTTGTACACGAGTATATGAAAAAACCAGAATTTGTGGAGCTCATGCGAAGACTCGGTGCATTGGGAGATGGCAACCAAGATCAAAgtaaccctttgtgcctactctatctttttaattcccccaaacttcattgaatattattttggctctctttgtcatgtgaaagcccattttcacctctcctggttaaggggaagcctagtaatgtagtacgtgtgtatatttctatatcag
Basic information
species | Glycine max |
transcript | GLYMA08G22390.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G22390.1 (Glycine max), 5'ss of exon 11
lower sequence: AT3G20650.1 (Arabidopsis thaliana), 5'ss of exon 11
AAGAACTCGCACGAATTTGTACACGAGTATATGAAAAAACCAGAATTTGTGGAGCTCATGCGAAGACTCGGTGCATTGGGAGATGGCAACCAAGATCAAAgtaaccctttgtgcctactctatctttttaattcccccaaacttcattgaatattattttggctctctttgtcatgtgaaagcccattttcacctctcctggttaaggggaagcctagtaatgtagtacgtgtgtatatttctatatcag
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AAGAACTCCCACGAGTTTGTCCATGAGTATATGAAAAAGCCAGAGTTTGTCGAACTCATGAGAAGGCTTGGTGCTTTGGGTGATGGTAGCAATGATCAGAgtaagtctttgt-tcgattcttgcttcatatcatcct---------tttgattctaaccaaatgcgagataacaaaactaacttgattagtatctttccag-------------------------------------------------
upper sequence: GLYMA08G22390.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv19s0014g04740.t01 (Vitis vinifera), 5'ss of exon 11
AAGAACTCGCACGAATTTGTACACGAGTATATGAAAAAACCAGAATTTGTGGAGCTCATGCGAAGACTCGGTGCATTGGGAGATGGCAACCAAGATCAAAgtaaccc---tttgtgcctactc----------tatctttttaattcccccaaacttcattga---atattattttggctctctttgtcat----gtgaaagcccattttcacctctcctggttaaggggaagcctagtaatgtagtacgtgtgtat--atttctatatcag-----------------
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AAGAACTCACATGAATTTGTGGATGAGTACTTGAAAAAACCAGAATTTGTTGAGCTTATGCGGAGGCTAGGTGCTTTGGGTGATGGAAACCAAGACCAGAgtaagtccaattcctgtttgtttccctcccatatatcttttttttcccctctcatcttctccccttacccttcttcaacttgtgttctcattctaatgatggaacatttctcatttgccttctgaaattgcatcattttcacatctccaaagagtattgacttttaaaatatcgtctttcaatgtttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6848281|gb|AW350571.1|AW350571EST: GGAGCTCATGCGAAGACTCGGTGCATTGGGAGATGGCAACCAAGATCAAA GCACACTCTCAGCTGATGAATGGGAGGCAGCATATTTATACATGTCATTTG
genomic: GGAGCTCATGCGAAGACTCGGTGCATTGGGAGATGGCAACCAAGATCAAAgtaacccttt ... tctatatcagGCACACTCTCAGCTGATGAATGGGAGGCAGCATATTTATACATGTCATTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGAACTCGCACGAATTTGTACACGAGTATATGAAAAAACCAGAATTTGTGGAGCTCATGCGAAGACTCGGTGCATTGGGAGATGGCAACCAAGATCAAAgtaaccctttgtgcctactctatctttttaattcccccaaacttcattgaatattattttggctctctttgtcatgtgaaagcccattttcacctctcctggttaaggggaagcctagtaatgtagtacgtgtgtatatttctatatcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA