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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGCAGTTCAACTGTTATCACCTGCCAGCATTGTTGCAAAAATGAATGGCCGAGACAACATCTGCAAGgtaattatgaaattggaccatttgatgttcagcatttgaaaaaatgtttactatgtgcttatcctcaactcaatgagtcattattgtgaaatttatag

Basic information

species Glycine max
transcript GLYMA08G21830.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G21830.1 (Glycine max), 5'ss of exon 11
lower sequence: AT5G22330.1 (Arabidopsis thaliana), 5'ss of exon 11
GCATGCAGTTCAACTGTTATCACCTGCCAGCATTGTTGCAAAAATGAATGGCCGAGACAACATCTGCAAGgtaattatgaaattggaccatttgatgttcagcatttgaaaaaatgtttactatgtgcttatcctcaactcaatgagtcattattgtgaaattt-atag
||| || || || ||  | || |||||||||||||| || |||||||||||||| ||||| || |||||||||  | |     || |   || ||       || |  || ||||||  | ||||||  | |  |    | | | |  | | ||  | || ||| | ||
GCACGCTGTGCAGCTTCTGTCTCCTGCCAGCATTGTAGCGAAAATGAATGGCCGTGACAATATTTGCAAGgtagatttacttgtgaaatcttaga------acaataaaacaaatgtaaaatatgtggatgttatg---ttattaatccttcatcttaaattttgacag

upper sequence: GLYMA08G21830.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv06s0004g02910.t01 (Vitis vinifera), 5'ss of exon 11
GCATGCAGTTCAACTGTTATCACCTGCCAGCATTGTTGCAAAAATGAATGGCCGAGACAACATCTGCAAGgtaattatgaaattgg---accatttgatgt----------tcagcatttga--aaaaatgtttacta-tgtg-cttatcctcaactcaatgagtc--attattgtgaaatttatag---------------------
|||||||||||| || ||||||||||| |||||| | || |  |||||||| ||||||||||| ||||||||| |||   | |||    | |||||||| |          |||  |||  |  || ||      ||| |||| ||| || | ||    ||    |  |||  || ||| |||| |                      
GCATGCAGTTCAGCTCTTATCACCTGCTAGCATTATGGCCAGGATGAATGGTCGAGACAACATTTGCAAGgtacttacagatttgatgaatcatttgatatatgcatgctctcacaattctaccaacaaaaccccctagtgtgtcttgtcttgaaaaatattcaccctattcatgggaattttacatttctatttttacaatctatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22930082|gb|BU547221.1|BU547221
EST:     CACCTGCCAGCATTGTTGCAAAAATGAATGGCCGAGACAACATCTGCAAG                         GCGGATCTTGAGGAAGTTTGTACGCTATATTTGGATGCCAAATCATCGGCC
genomic: CACCTGCCAGCATTGTTGCAAAAATGAATGGCCGAGACAACATCTGCAAGgtaattatga ... aaatttatagGCGGATCTTGAGGAAGTTTGTACGCTATATTTGGATGCCAAATCATCGGCC
EST: gi|213600069|gb|DB976028.1|DB976028
EST:     CACCTGCCAGCATTGTTGCAAAAATGAATGGCCGAGACAACATCTGCAAG                         GCGGATCTTGAGGAAGTTTGTACGCTATATTTGGATGCCAAATCATCGGCC
genomic: -ACCTGCCAGCATTGTTGCAAAAATGAATGGCCGAGACAACATCTGCAAGgtaattatga ... aaatttatagGCGGATCTTGAGGAAGTTTGTACGCTATATTTGGATGCCAAATCATCGGCC