1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAGgtaaaccatcaatctcaaaagaccttgaaaattttcttttcatttatatcctattgcttcaaccttgtctgactttatgaatatactctattcacaagctataattcttgaatggaagtgtaattctttgtaaattgcaatgttacccttttcag
species | Glycine max |
transcript | GLYMA08G21380.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAG GAAGCCTGTGGAACAGTTCTTGAAGGCTGTAGATGAAATCACGEST: gi|18732951|gb|BM527341.1|BM527341
genomic: ATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAGgtaaaccatc ... cccttttcagGAAGCCTGTGGAACAGTTCTTGAAGGCTGTAGATGAAATCACG
EST: ATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAG GAAGCCTGTGGAACAGTTCTTGAAGGCTGTAGATGAAATCACGTTGAATGAEST: gi|8826432|gb|BE210162.1|BE210162
genomic: ATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAGgtaaaccatc ... cccttttcagGAAGCCTGTGGAACAGTTCTTGAAGGCTGTAGATGAAATCACGTTGAATGA
EST: ATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAG GAAGCCTGTGGAACAGTTCTTGAAGGCTGTAGATGAAATCACGTTGAATGAEST: gi|10233365|gb|BE802253.1|BE802253
genomic: ATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAGgtaaaccatc ... cccttttcagGAAGCCTGTGGAACAGTTCTTGAAGGCTGTAGATGAAATCACGTTGAATGA
EST: ATGATTGCATCACAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAG GAAGCCTGCGGAACAGTTCTTGAAGGCTGTAGATGAAATCACGTCGAATGA
genomic: ATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAGgtaaaccatc ... cccttttcagGAAGCCTGTGGAACAGTTCTTGAAGGCTGTAGATGAAATCACGTTGAATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAGgtaaaccatcaatctcaaaagaccttgaaaattttcttttcatttatatcctattgcttcaaccttgtctgactttatgaatatactctattcacaagctataattcttgaatggaagtgtaattctttgtaaattgcaatgttacccttttcag
- - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - GGAGAA