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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAATGCCAATAGTAAGAAGGAGAAAAAGAGGAAGGTGAAGCACAGTGAAGCATCAAAGCAGATACATGCACTTGAAAATATTGAGGCGGGGAATGAAGgttagaattttggaccatgtggctgttcttactagtcaaaatacatactttgagaaatttcctcaataatactaaataaattcttttccag

Basic information

species Glycine max
transcript GLYMA08G15380.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193479750|gb|FK445431.1|FK445431
EST:     CGGGGAACGAAG                         GAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGA
genomic: CGGGGAATGAAGgttagaattt ... tcttttccagGAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGA
EST: gi|208160824|gb|GD961640.1|GD961640
EST:     CGGGGAATGAAG                         GAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGA
genomic: CGGGGAATGAAGgttagaattt ... tcttttccagGAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGA
EST: gi|208044214|gb|GD838790.1|GD838790
EST:     GGCGGGGAATGAAG                         GAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGA
genomic: GGCGGGGAATGAAGgttagaattt ... tcttttccagGAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGA
EST: gi|208332861|gb|GE126984.1|GE126984
EST:     GGCGGGGAATGAAG                         GAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGA
genomic: GGCGGGGAATGAAGgttagaattt ... tcttttccagGAACCAACAATGAGAAGACATCCAATCTGACTCAAACAAAGTTGGAGAAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGAATGCCAATAGTAAGAAGGAGAAAAAGAGGAAGGTGAAGCACAGTGAAGCATCAAAGCAGATACATGCACTTGAAAATATTGAGGCGGGGAATGAAGgttagaattttggaccatgtggctgttcttactagtcaaaatacatactttgagaaatttcctcaataatactaaataaattcttttccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT