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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAAAGAGTTCCGTGGCCATACATCTTATGTGAATGATGCAATTTTTACAAATGATGGGAGTCGTGTTATTACTGCCTCAAGTGACTGTACAATCAAGgtctgttacttggcattgtacttgaagttccttgtttatctggtgttcataagagatgtattttctcctccttattgtag

Basic information

species Glycine max
transcript GLYMA08G13560.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G13560.2 (Glycine max), 5'ss of exon 11
lower sequence: AT1G73720.1 (Arabidopsis thaliana), 5'ss of exon 11
GTTGAAAGAGTTCCGTGGCCATACATCTTATGTGAATGATGCAATTTTTACAAATGATGGGAGTCGTGTTATTACTGCCTCAAGTGACTGTACAATCAAGgtctgttacttggcattgtacttgaagttccttgtttatctggtgttcataagagatgtattttct-cctccttattgtag------------------
||||||||| || ||||| || ||||||||||| ||| |||| || ||||||| |||||| || ||| |||| |||||||| ||||| |||||| | |||||   ||  | ||| |||  ||   ||     |  || | |    ||   |     ||    |||| ||   | ||   ||                  
GTTGAAAGAATTTCGTGGTCACACATCTTATGTAAATCATGCCATCTTTACAAGTGATGGAAGCCGTATTATCACTGCCTCCAGTGATTGTACAGTAAAGgtaaattcttcggctttg-gctgtcagcagtatcattgtttctcatttggactctctgccccttctgccgtgtaataacagtcttgtttccttgcacag

upper sequence: GLYMA08G13560.2 (Glycine max), 5'ss of exon 11
lower sequence: Vv17s0000g08930.t01 (Vitis vinifera), 5'ss of exon 11
GTTGAAAGAGTTCCGTGGCCATACATCTTATGTGAATGATGCAATTTTTACAAATGATGGGAGTCGTGTTATTACTGCCTCAAGTGACTGTACAATCAAGgtctgtta--cttggcattgtacttgaagttc----------cttgtttatctggtgttcataaga----gatgtattttctcctccttattgtag
||| || || |||||||||||| ||||||||||||||||||| || ||||||||||| ||  |||||||| |||||||||| ||||| || ||| | |||||   ||   |||| | | | |  |||||              | |  ||| |  |  || |  |      |    ||   |   ||||||| |||
GTTAAAGGAATTCCGTGGCCATTCATCTTATGTGAATGATGCTATATTTACAAATGACGGAGGTCGTGTTGTTACTGCCTCCAGTGATTGCACAGTAAAGgtaaatttatcttgtcctgggatgtgaagacaacagactaggttaggctatttcattctcctgtgcccataacaggttgcatatgccttattatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192300449|gb|FG987906.1|FG987906
EST:     CAAATGATGGGAGTCGTGTTATTACTGCCTCAAGTGACTGTACAATCAAG                         GTCTGGGATGTGAAGACTACAGACTGCATACAAACTTTTAAGCCACCTCCT
genomic: CAAATGATGGGAGTCGTGTTATTACTGCCTCAAGTGACTGTACAATCAAGgtctgttact ... cttattgtagGTCTGGGATGTGAAGACTACAGACTGCATACAAACTTTTAAGCCACCTCCT