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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGATAGTGAATATCTAAGTGGCCATGAGGTGTTCCTCAGGCGTGTTGCCTCTGCCTTCAACAACTTTGCAGAATCTACTGAAAAATCATGCCGTGAAAAgttaaccaccacttgtccccatttgctacaagtttgtttccatatggcaaatgagtcttttaatgaaaaaaaaaaaaacaaaataaataatcatgggctt...

Basic information

species Glycine max
transcript GLYMA08G07990.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G07990.2 (Glycine max), 5'ss of exon 11
lower sequence: AT3G19720.2 (Arabidopsis thaliana), 5'ss of exon 13
AAGATAGTGAATATCTAAGTGGCCATGAGGTGTTCCTCAGGCGTGTTGCCTCTGCCTTCAACAACTTTGCAGAATCTACTGAAAAATCATGCCGTGAAAAgttaacc-accacttgtccccatttgctacaagtttgt---ttccatatgg---caaatgagtcttttaatgaaaaaaaaaaaaacaaaataaataatcatgggctt
||||  |||||||| ||||||| ||||||||||| |||| ||| ||||| || || |||||||  ||||  || || || ||||||||||| ||||| |||| |  | |   |   | ||  ||     || ||  ||   | | |  ||    | | ||||   |||| |||   |  |        | |  ||| |  |  ||  
AAGAAGGTGAATATTTAAGTGGGCATGAGGTGTTTCTCAAGCGGGTTGCTTCAGCATTCAACAGTTTTGTGGAGTCCACAGAAAAATCATGTCGTGACAAgtaattctatttccaattcctgttcttaccatgtcggtgcctcctacctgtgttctagtgagc--tttagtgattgatcaccctttggattttata-ttgtttgcag

upper sequence: GLYMA08G07990.2 (Glycine max), 5'ss of exon 11
lower sequence: Vv12s0055g00490.t01 (Vitis vinifera), 5'ss of exon 13
AAGATAGTGAATATCTAAGTGGCCATGAGGTGTTCCTCAGGCGTGTTGCCTCTGCCTTCAACAACTTTGCAGAATCTACTGAAAAATCATGCCGTGAAAAgttaaccaccacttgtccccatttgctacaagtttgtttccatatggcaaatgagtcttttaatgaaaaaaaaaaaaacaaaataaataatcatgggctt----------
||||| |||||||||||||||||||||||||||| ||| |||||||||| || ||||||||||| ||||| ||||| ||||||| |  ||||| ||||||||     |   | || |   |||  | |  | ||| ||    |||      |||  |||   ||||  |  | | || ||    ||||    ||| ||||          
AAGATGGTGAATATCTAAGTGGCCATGAGGTGTTTCTCCGGCGTGTTGCTTCGGCCTTCAACAATTTTGCTGAATCCACTGAAAGAGAATGCCATGAAAAgta---tatatcctgccttgattc-ccatcaattttttaaattat------tgatccttcctatgactatgatacaagcaggtcaaatttatatgtgcttattggtttaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13789812|gb|BG652403.1|BG652403
EST:     GAAAAATCATGCCGTGAAAA                         ATGTATGGAGGACTTGGTAAGCACCACAAGATATGTTTCATGGTCTCTCCA
genomic: GAAAAATCATGCCGTGAAAAgttaaccacc ... tttgctacagATGTATGGAGGACTTGGTAAGCACCACAAGATATGTTTCATGGTCTCTCCA