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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCCGTTTGAAGTGCTTGTACGCAGGCAGATATCTCGACTATTGGATCCAAGTCTTCAGTGCGCTAGGTTTATATATGACGAGTTAATGAAAgtaagggtttatgacttgctatttctgcttctttacttcaccaccatgcaaatatgtgctaaattaaaatctcttctcttcag

Basic information

species Glycine max
transcript GLYMA08G07160.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G07160.1 (Glycine max), 5'ss of exon 11
lower sequence: AT2G14120.3 (Arabidopsis thaliana), 5'ss of exon 12
GTCCCGTTTGAAGTGCTTGTACGCAGGCAGATATCTCGACTATTGGATCCAAGTCTTCAGTGCGCTAGGTTTATATATGACGAGTTAATGAAAgtaagggtttatgacttgctatttctgcttctttact--tcaccaccatgcaaatatgtgctaaattaaaatctcttctcttcag
|| || |||||||| |||||  | ||||| ||||||||  |||| ||||| || ||||||||||||||||| || |  || ||| || | || ||     |||       | |  ||     |  | |||  | |    ||||   ||   |  |||||| |||  |  | | | |||
GTTCCATTTGAAGTTCTTGTCAGGAGGCAAATATCTCGTTTATTAGATCCCAGCCTTCAGTGCGCTAGGTTCATCTTCGATGAGCTAGTAAAGgtgttatttttatttgcgtttctttatgatgctaactgttgatttacatgaccatgaattttaaattgaaaaat--tatgtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12496581|gb|BG047136.1|BG047136
EST:     TGGATCCAAGTCTTCAGTGCGCTAGGTTTATATATGACGAGTTAATGAAA                         ATCAGCCATCACTGTATGGTCACTGAATTGCAGCGGTTCCCTTTCTTGAGA
genomic: TGGATCCAAGTCTTCAGTGCGCTAGGTTTATATATGACGAGTTAATGAAAgtaagggttt ... ttctcttcagATCAGCCATCACTGTATGGTCACTGAATTGCAGCGGTTCCCTTTCTTGAGA